When you say it stopped running, do you mean that it exited or that it kept running but nothing printed out and it did not proceed to further steps?
On 2/15/19 12:42 PM, ?? wrote: > > ?0?2?0?2?0?2?0?2?0?2?0?2?0?2?0?2External Email - Use Caution > > Hello FreeSurfer Developers, > > when i was run the recon-all -all,?0?2sometimes the terminal would show > randomSeed 1234, and stop running the?0?2process > > here is my > > #@# Curvature Stats rh Fri Feb 15 17:31:38 GMT 2019 > > /Users/cengzhou/Desktop/volumetric_FS/subject1/subject/surf > > \n mris_curvature_stats -m --writeCurvatureFiles -G -o > ../stats/rh.curv.stats -F smoothwm subject rh curv sulc \n > > ?0?2?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 Toggling save flag on curvature files ?0?2 > ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 > ?0?2 [ ok ] > > ?0?2?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 Outputting results using filestem > ?0?2 [ > ../stats/rh.curv.stats ] > > ?0?2?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 Toggling save flag on curvature files ?0?2 > ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 > ?0?2 [ ok ] > > Setting surface?0?2 ?0?2 ?0?2 [ subject/rh.smoothwm ] > > ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 > ?0?2 Reading surface... ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 > ?0?2 [ ok ] > > Setting texture ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 [ curv ] > > ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 > ?0?2 Reading texture... ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 > ?0?2 [ ok ] > > Setting texture ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 [ sulc ] > > ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 > ?0?2 Reading texture...Gb_filter = 0 > > ?0?2?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 [ ok ] > > ?0?2 ?0?2 ?0?2 Calculating Discrete Principal Curvatures... > > ?0?2?0?2 Determining geometric order for vertex faces... > [####################] [ ok ] > > ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 Determining KH > curvatures... > [####################] [ ok ] > > ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 Determining k1k2 > curvatures... > [####################] [ ok ] > > deltaViolations?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 ?0?2 [ 257 ] > > Gb_filter = 0 > > > WARN:?0?2 ?0?2 S lookup ?0?2 min: ?0?2 ?0?2 ?0?2 ?0?2 -0.254695 > > WARN:?0?2 ?0?2 S explicit min: ?0?2 ?0?2 ?0?2 ?0?2 0.000000vertex = 112 > > #-------------------------------------------- > > #@# Sphere lh Fri Feb 15 17:31:44 GMT 2019 > > /Users/cengzhou/Desktop/volumetric_FS/subject1/subject/scripts > > \n mris_sphere -rusage > /Users/cengzhou/Desktop/volumetric_FS/subject1/subject/touch/rusage.mris_sphere.lh.dat > > -seed 1234 ../surf/lh.inflated ../surf/lh.sphere \n > > setting seed for random number genererator to 1234 > > $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ > > ?0?2 $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ > > reading original vertex positions... > > unfolding cortex into spherical form... > > surface projected - minimizing metric distortion... > > > == Number of threads available to mris_sphere for OpenMP = 1 == > > scaling brain by 0.321... > > MRISunfold() max_passes = 1 ------- > > tol=5.0e-01, sigma=0.0, host=cengz, nav=1024, nbrs=2, l_area=1.000, > l_dist=1.000 > > using quadratic fit line minimization > > complete_dist_mat 0 > > rms 0 > > smooth_averages 0 > > remove_neg 0 > > ico_order 0 > > which_surface 0 > > target_radius 0.000000 > > nfields 0 > > scale 1.000000 > > desired_rms_height -1.000000 > > momentum 0.900000 > > nbhd_size 7 > > max_nbrs 8 > > niterations 25 > > nsurfaces 0 > > SURFACES 3 > > flags 0 (0) > > use curv 0 > > no sulc 0 > > no rigid align 0 > > mris->nsize 2 > > mris->hemisphere 0 > > randomSeed 1234> > > i have attached the recon-all log > > cheers > > Zeng > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
