Do all images and time points have contrast? If some do and some don't, then I don't think you can properly do the analysis?
On 11/15/19 10:06 AM, Darko Komnenić wrote: > > External Email - Use Caution > > Dear Freesurfer experts, > I wanted to run the Freesurfer's longitudinal processing pipeline > (described here > https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalProcessing) on a > series of MRI scans from a single patient. However, after looking at > the scans, i realized that for most time points, the patient doesn't > have a "simple/normal" T1 MPRAGE sequence available. Instead, they > have a T1 sequence with a contrast agent, as well as T1 mp2rage > sequences. > > Is it possible/advisable to run recon-all in general or this pipeline > in particular on T1 MPRAGE scans that have a contrast agent, or that > are mp2rage instead of MPRAGE? > > Thanks in advance! > Best, > Darko > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
