Please try: segmentThalamicNuclei.sh 4001 /Applications/freesurfer_dev/freesurfer/subjects/ /Applications/freesurfer_dev/freesurfer/subjects/4001/mri/orig/T2.nii T2_THALAMUS t2 Cheers, /Eugenio
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Miguel Ángel Rivas Fernández <miguelrivasf...@gmail.com> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Date: Sunday, 8 December 2019 at 15:00 To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Thalamic nuclei segmentation segmentThalamicNuclei.sh 4001 /Applications/freesurfer_dev/freesurfer/subjects/4001/mri/orig/T2.nii THALAMUS BBREGISTER_MODE t2
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