Hi Renew - I think it's just because of using "/" instead of "\" at the end of
lines for bveclist and bvallist. If the problem persists after you change that,
let us know.
a.y
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Renew Andrade
<andradere...@yahoo.com>
Sent: Wednesday, January 29, 2020 11:54 AM
To: Freesurfer Support List <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] format bvalues bvectors tracula
External Email - Use Caution
Dear FreeSurfer experts:
I have tried to run tracula -prep but I cannot get to no where for the moment.
I keep receiving this error. I assumed numbers had to be aligned in rows and
columns. But none either that or one space in between seems to work. I don't
know what format means with respect to bvalues o bvectors. It is not clear
enough to me in the tutorial how do I have to fix the issue.
Sincerely,
Andrade.
root@andraderenew:/home/andraderenew# trac-all -prep -c
'/media/andraderenew/backup/image_databases/processed_data/freesurfer_preprocessed/dmrirc.IXI'
Too many ('s.
INFO: SUBJECTS_DIR is
/media/andraderenew/backup/image_databases/processed_data/freesurfer_preprocessed
INFO: Diffusion root is
/media/andraderenew/backup/image_databases/processed_data/freesurfer_preprocessed
Actual FREESURFER_HOME /usr/local/freesurfer
INFO: FreeSurfer build stamps do not match
Subject Stamp: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c
Current Stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
INFO: current FREESURFER_HOME does not match that of previous processing.
Current: /usr/local/freesurfer
Previous: /Applications/freesurfer
trac-preproc -c
/media/andraderenew/backup/image_databases/processed_data/freesurfer_preprocessed/IXI_25_Guys_T1/scripts/dmrirc.local
-log
/media/andraderenew/backup/image_databases/processed_data/freesurfer_preprocessed/IXI_25_Guys_T1/scripts/trac-all.log
-cmd
/media/andraderenew/backup/image_databases/processed_data/freesurfer_preprocessed/IXI_25_Guys_T1/scripts/trac-all.cmd
#-------------------------------------
/usr/local/freesurfer/bin/trac-preproc
#-------------------------------------
#@# Image corrections mié ene 29 17:42:22 CET 2020
mri_convert --bvec-voxel
/media/andraderenew/backup/image_databases/IXI_dataset/guest-20191220_131017/25_Guys/DTI/NIfTI/IXI025-Guys-0852-DTI-00.nii.gz
/media/andraderenew/backup/image_databases/processed_data/freesurfer_preprocessed/IXI_25_Guys_T1/dmri/dwi_orig.nii.gz
mri_convert.bin --bvec-voxel
/media/andraderenew/backup/image_databases/IXI_dataset/guest-20191220_131017/25_Guys/DTI/NIfTI/IXI025-Guys-0852-DTI-00.nii.gz
/media/andraderenew/backup/image_databases/processed_data/freesurfer_preprocessed/IXI_25_Guys_T1/dmri/dwi_orig.nii.gz
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from
/media/andraderenew/backup/image_databases/IXI_dataset/guest-20191220_131017/25_Guys/DTI/NIfTI/IXI025-Guys-0852-DTI-00.nii.gz...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.998725, -0.0503472, 0.00377193)
j_ras = (-0.0504772, 0.994141, -0.0955763)
k_ras = (-0.00106217, 0.0956448, 0.995415)
writing to
/media/andraderenew/backup/image_databases/processed_data/freesurfer_preprocessed/IXI_25_Guys_T1/dmri/dwi_orig.nii.gz...
cp
/media/andraderenew/backup/image_databases/IXI_dataset/guest-20191220_131017/25_Guys/DTI/bvec/gradients.txt
/media/andraderenew/backup/image_databases/processed_data/freesurfer_preprocessed/IXI_25_Guys_T1/dmri/dwi_orig.bvecs
ERROR: Must specify input table of b-values
Linux andraderenew 5.0.0-37-generic #40~18.04.1-Ubuntu SMP Thu Nov 14 12:06:39
UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
trac-preproc exited with ERRORS at mié ene 29 17:42:22 CET 2020
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