should be something like
mri_label2label --srclabel input.label --trglabel ouput.label --outmask
label.mask.nii.gz --regmethod surface --hemi lh --srcsubject subject
--trgsubject subject
On 1/30/2020 10:07 PM, Alexopoulos, Dimitrios wrote:
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Having difficulty with how to use label2label for this purpose. Just
need a binary mask of medial wall (vertex number and 0 or 1s) on
native surface. What's would this command be?
On Jan 28, 2020 5:42 PM, "Greve, Douglas N.,Ph.D."
<dgr...@mgh.harvard.edu> wrote:
*Attention:*This email originated from outside the university.
Do you mean you want a binary mask of the medial wall?
You can create a mask of the cortical label (?h.cortex.label) with
mri_label2label
You can then invert that with something like
fscalc lh.cortex.mask.mgz not -o lh.medialwall.mask.mgz
On 1/28/2020 6:31 PM, Alexopoulos, Dimitrios wrote:
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Is there a freesurfer file that contains metric info that
delineates the medial wall in the native surface output for an
individual?
It appears to be associated with the ?lh.aparc.annot file (below).
I’d like to be able to export the medial wall metric into
Worbench.
Thanks.
Jim
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