You can try,
mri_convert --in_orientation PIR t1_flip.nii t1_flip_flip.nii
but I'm not promising anything
On 2/14/2020 11:03 AM, Miguel Ángel Rivas Fernández wrote:
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Dear Douglas,
My image is in the correct orientation. The reason is that am using a
software to detect brain lesions that only works in left hemisphere
and my subject have the lesion in the right hemisphere. I tried it
with the following command and it works
mri_convert --in_orientation PIL t1.nii t1_flip.nii
Now I would like to come back to the original orientation, which
command should I use?
Thanks in advance.
Best regards,
El vie., 14 feb. 2020 a las 16:01, Douglas N. Greve
(<dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>>) escribió:
Is the image in the wrong orientation (ie, is it not truly in PIR)
or do you want to change the orientation? doing a left-right swap
is more than changing the orientation
On 2/11/2020 4:06 PM, Miguel Ángel Rivas Fernández wrote:
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Dear Freesurfer experts,
Which command should I use to flip the left-right orientation of
a T1 image?. Actually my image is in PIR orientation, I used the
following command
mri_info --orientation
'/home/rmn/Desktop/study/E03/3d/coanat_E03.nii'
*PIR*
Thanks in advance,
Best regards,
--
*Miguel Ángel Rivas Fernández*
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*Miguel Ángel Rivas Fernández*
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