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I am trying to transform a free surfer segmentation to functional space using reg-feat2anat but I get the error tkregister2_cmdl_cmdl: Command not found. I am running freesufer on linux through a virtual machine. See below for the full command and output. Any help would be greatly appreciated. reg-feat2anat --feat LTFI_FEAT_PE_FB_R1/LTFI_02.feat --subject LTFI_02 FeatDir is LTFI_FEAT_PE_FB_R1/LTFI_02.feat template volume is LTFI_FEAT_PE_FB_R1/LTFI_02.feat/example_func.nii.gz log file is LTFI_FEAT_PE_FB_R1/LTFI_02.feat/reg/freesurfer/reg-feat2anat.log Thu 26 Mar 17:17:56 GMT 2020 /storage/gold/cinn/2013/neuroade/LTFI_Analysis /usr/local/freesurfer7/freesurfer/bin/reg-feat2anat --feat LTFI_FEAT_PE_FB_R1/LTFI_02.feat --subject LTFI_02 Linux neurodebian-1022 4.4.0-165-generic #193-Ubuntu SMP Tue Sep 17 17:42:52 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux example_func ras_good_flag 1 ------------------------------------------------------- Initializing exf2anat with header tkregister2_cmdl_cmdl --targ /storage/gold/cinn/2013/neuroade/LTFI_Analysis/Freesurfer_output/LTFI_02/mri/brainmask.mgz --mov LTFI_FEAT_PE_FB_R1/LTFI_02.feat/example_func.nii.gz --reg LTFI_FEAT_PE_FB_R1/LTFI_02.feat/reg/freesurfer/anat2exf.register.dat.init --fslregout LTFI_FEAT_PE_FB_R1/LTFI_02.feat/reg/freesurfer/exf2anat.init.fsl.mat --regheader --noedit tkregister2_cmdl_cmdl: Command not found. Many Thanks Tiffany ------------------------------------------------------ Tiffany Bell, PhD Postdoctoral Associate Cumming School of Medicine University of Calgary Alberta Children’s Hospital 2888 Shaganappi Trail, NW Calgary, AB T3B 6A8 (E) tiffany.b...@ucalgary.ca<mailto:tiffany.b...@ucalgary.ca> (T) 403-955-2970 www.kidsmigraine.info<http://www.kidsmigraine.info>
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