Can you run recon-all again with -debug as the first argument? Send me
the command line and all the terminal output
On 7/9/2020 2:10 PM, Peka Savayan wrote:
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The file that I sent you is the recon-all.log file.
If copying file 'RB_all_2008-03-26.gca' from another FS version to
directory ..../freesurfer-7.1.0/average
will solve my problem?
On Thu, Jul 9, 2020 at 12:30 PM Douglas N. Greve
<dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> wrote:
Can you send the recon-all.log file?
On 7/9/2020 1:25 PM, Peka Savayan wrote:
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I can open it. Can you? No permission required to my knowledge.
On Thu, Jul 9, 2020 at 11:53 AM Douglas N. Greve
<dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> wrote:
Do you have read permission to it?
On 7/8/2020 2:25 PM, Peka Savayan wrote:
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Yes.
On Wed, Jul 8, 2020 at 10:01 AM Douglas N. Greve
<dgr...@mgh.harvard.edu <mailto:dgr...@mgh.harvard.edu>> wrote:
Does that file exist?
On 7/7/2020 8:59 AM, Peka Savayan wrote:
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Dear experts,
I try to run recon-all using FS 7.1.0 on a cluster with
OS CentOS6.
I got the recon-all.log error message:
ERROR: cannot find
/share/apps/freesurfer-7.1.0/average/RB_all_2008-03-26.gca
Thanks for your help.
Sincerely,
Peka
--
Peka Christova Savayan, PhD
Assistant Prof. Dept. Neuroscience Univ. Minnesota
Member Center Cognitive Sciences Univ. Minnesota
Graduate program Center Cognitive Sciences Univ. Minnesota
Research Physicist Brain Sciences Center VAHCS
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<mailto:Freesurfer@nmr.mgh.harvard.edu>
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--
Peka Christova Savayan, PhD
Assistant Prof. Dept. Neuroscience Univ. Minnesota
Member Center Cognitive Sciences Univ. Minnesota
Graduate program Center Cognitive Sciences Univ. Minnesota
Research Physicist Brain Sciences Center VAHCS
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Peka Christova Savayan, PhD
Assistant Prof. Dept. Neuroscience Univ. Minnesota
Member Center Cognitive Sciences Univ. Minnesota
Graduate program Center Cognitive Sciences Univ. Minnesota
Research Physicist Brain Sciences Center VAHCS
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Peka Christova Savayan, PhD
Assistant Prof. Dept. Neuroscience Univ. Minnesota
Member Center Cognitive Sciences Univ. Minnesota
Graduate program Center Cognitive Sciences Univ. Minnesota
Research Physicist Brain Sciences Center VAHCS
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
