look in $FREESURFER_HOME/FreeSurferColorLUT.txt
eg,
8103 Left-AV 0 85 0 0
8104 Left-CeM 170 85 0 0
8105 Left-CL 0 170 0 0
8106 Left-CM 170 170 0 0
8108 Left-LD 170 255 0 0
8109 Left-LGN 0 0 127 0
8110 Left-LP 0 85 127 0
8111 Left-L-Sg 170 85 127 0
8112 Left-MDl 0 170 127 0
8113 Left-MDm 170 170 127 0
8115 Left-MGN 170 255 127 0
8116 Left-MV(Re) 0 0 255 0
8117 Left-Pc 170 0 255 0
8118 Left-Pf 0 85 255 0
8119 Left-Pt 170 85 255 0
8120 Left-PuA 0 170 255 0
8121 Left-PuI 170 170 255 0
8122 Left-PuL 0 255 255 0
8123 Left-PuM 170 255 255 0
8125 Left-R 255 0 0 0
8126 Left-VA 85 85 0 0
8127 Left-VAmc 255 85 0 0
8128 Left-VLa 85 170 0 0
8129 Left-VLp 255 170 0 0
8130 Left-VM 85 255 0 0
8133 Left-VPL 255 0 255 0
On 8/3/2020 2:26 PM, Jason Smucny wrote:
External Email - Use Caution
Hello Freesurfer Team,
I am running thalamic parcellation using freesurfer 7.1 and the
program (http://freesurfer.net/fswiki/ThalamicNuclei)is outputting
thalamic labels e.g. 8108, 8109, 8208 etc. I was wondering if you
might point me towards a dictionary so I know which thalamic subregion
corresponds to each numbered label. Thank you,
Jason
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https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
