That is really LGI. aparcstats2table just defaults to "thickness". But
you should double check that the value you see in
lh.aparc_lgi.stats is the same as in result_lgi_lh.txt
On 9/29/2020 12:38 PM, 祝菲 wrote:
External Email - Use Caution
Dear expert,
I have used freesurfer v6.0 to calculate local Gyrification index (
LGI ). And I have output the file named lh.pial_lgi and extracted the
value of LGI by using the following command:
> mris_anatomical_stats -a ${SUBJECTS_DIR}/S005/label/lh.aparc.annot -t
pial_lgi -f ${SUBJECTS_DIR}/S005/stats/lh.aparc_lgi.stats S005 lh
> aparcstats2table --subjects S005 --hemi lh --meas thickness --skip
—parc aparc_lgi --tablefile result_lgi_lh.txt
However, I found that the header of the output result showed the
“thickness" instead of “LGI". Does this “thickness" represent the
index of “LGI"? I have attached the result of one sample in the
attachment. Thank you again for taking your precious time to solve my
problem！
kind regards
zhu fei
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