Dear FreeSurfer usersI have been running the longitudinal pipeline with hippocampus segmentation in FreeSurfer 7.1.1 on a computer cluster with a batch-system that regulates number of cores to use. There is though a problem when running /segmentHA_T1.sh/ and /segmentHA_T1_long.sh/ since they creates several LWPs. Setting /export ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=1/ does lock a process to one core at a time, but NLWP is not 1, which is a problem on the cluster system. Does anyone know how to solve this problem?
Best regards Micael -- Micael Andersson Forskningsingenjör / Research engineer Umeå centre for Functional Brain Imaging (UFBI),http://secure-web.cisco.com/12Akmzmf7lNoIM6vY4oZS8ThVcuKpAstXXnCNC48NZbEjRGr7zhMWawYluqEmNUTFRd18_TO_P6qW6LVCqj1inLHn_xVcGHLvHCuLHREAaOqGqM8pBL8MT5A18ipSuKUgL9VXWPWlYRdesqHKE6ivX3e6--jC2S5B6b6mxcvT_zi0ey_KNXZNWC9yzC80U2LvL6Yrv6fyKJKOTnCID9uw7TJzf6j3ZgqV8w64idZpTN7RxxRC7k1MYY0WDxqhTxcXj41M8G2rSMpLAEwVtwGB9A/http%3A%2F%2Fwww.ufbi.umu.se%2F IMB,http://secure-web.cisco.com/1aRM7SYe-fj6VUV8cKV4oztH2VlWj0vjHPVw-mwtVisXDc8qH7fbm-GV27-jDL3_1Yc7sEND_ofKEM4UMyCwp8Ei0sFEHLFGU0s9MIZhSnOb37EUvZIfOcrD_FmGB_pZ9YqQje6z_BSI1LossipFOPBoCtMRN-TcZ4Cj9NkgTrhjxhg_v3EwOc_OOGgLY9MyzfQ-j8B_oMSle7OzJOgnnZ8822iEyZhhnoc0l9CpFoeB2UUgvD3EQnk91LNY2gTdcUApCR0XQn4xqqv-UTfBFHw/http%3A%2F%2Fwww.imb.umu.se%2F Umeå universitet / University of Umeå När du skickar e-post till Umeå universitet innebär det att universitetet behandlar dina personuppgifter. Läs mer här:http://secure-web.cisco.com/1dj8vzmfNf7iXAMw-9lSsyJlJp9R3BMfkXkbIARlXNNUB7UjUuJx17YgZipAc22wIGh50-lkQlT_5g0fPv6Bm8Jr7YjW1fEEmNu2dJAczKc3dlo-HJCmn82ZJlc68otMnK9tgd387C9_tGwO-3LcJClqYphsXPpB9JypFwOyFlnX4YFQnImnmplmBGl_AoUmvIlSLUrqhsWOcWA4TiGzVrFIoR-p-WSDmtLMe9PcKXg6BBgMwgNkPSV5Rn1uAVZRp6fjY6nlrPsZsBIBnKClW7w/http%3A%2F%2Fwww.umu.se%2Fgdpr By sending an email to Umeå University, the University will need to process your personal data. For more information, please read:http://secure-web.cisco.com/1mCKoXFgCh-qEsSu8mAqwyDyP5Mda90Ujjd2F5EPLm5YxZUlUX3E0UiJTY9gWBG54qRPqpR__ipxHzsrj38jUu7qgVz-2rlDsJZNre3M3SqTVaQxzEb4i9_QEoLEmWeK2VwBz8NiIQvBREMu2MbepvY_IXV3i4Pz7FxDWe8XyWOw8BsQfKLw8vBbRsp0c40kuQZCUlDw_bXogBFT0gd0pvLx7BNC5JSXsOEKSmJ8h0iyPizyLpr2WE-02mlPTqvJ6gLnkSctD7M6ZgIbhrbKEZg/http%3A%2F%2Fwww.umu.se%2Fen%2Fgdpr
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