It looks like the data are fairly low quality. This will require some manual intervention (control points, fixing topologogical errors, etc). See our wiki on manual interventions

On 6/15/2021 10:52 AM, Rosalia Dacosta Aguayo wrote:

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Here is what I am referring to:


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On Mon, Jun 14, 2021 at 7:47 PM Rosalia Dacosta Aguayo <rdacos...@gmail.com <mailto:rdacos...@gmail.com>> wrote:

    Dear Freesurfer's experts,


    I have run recon-all all to one subject with fmriprep.

    The work finished without errors. However, after inspecting the
    results, I have seen that there are some *grey regions* (mainly
    frontal and temporal ones) that have not been fully covered.

    I wonder how I could proceed in order to improve the segmentation.

    Kind regards,
    Rosie



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