External Email - Use Caution That file is in standard space, so if you want the Desikan parcellation, the files you are looking for are:
* $FREESURFER_HOME/subjects/fsaverage/label/?h.aparc.annot Best, Tim -- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany > On 10/11/2021 3:00 AM Dongyue Zhou <zhoudong...@mail.dlut.edu.cn> wrote: > > > External Email - Use Caution > > Dear FreeSurfer experts: > > I use the 'qcache' command to get the file > '$SUBJECTS_DIR/subjectname/surf/?h.thickness.fwhm10.fsaverage.mgh'. > > I can get cortical thickness in each vertice by reading this file in matlab. > And I know mean CT is computed by dividing sum CT of all ROI vertices by the > number of ROI vertices. > > Is there any way I can get annot for this file in one sub? > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1hzPq0WYeznmAzkPD0QLhAHqpVl-SmoP0FDtdIjUKmBp1y0U_fNDevBEFUGp-ojW-TsHTyUVxB7FSzFgCxip4Oj8t22ATRDofi7VL8uS3EPR8F2q7CBE2Y0Z-0aJKYlxcr1oQLQqYhyCfbqm1UFvDNr-mp9XvVnbXB1WDaKRHNlSPL9eKNJm0dKTdy3fVHtGdA9BWo6ebUMc8Mi4ALJtzpLvb3tEjPmRtTbR_6ZFYXB2ReErOIsXx1c41OLttRzUm_e8QnhTxQP4YpVVL6UblJQ/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
