On 2/16/2022 4:12 AM, k3...@free.fr wrote: > External Email - Use Caution > > Hi FreeSurfer community, > > I recently discovered the SAMSEG application in the FreeSurfer 7.2.0 release > and started to give a try on few subjects were FreeSurfer was having a hard > time to segment brain structures (due to poor contrast). > So I have few questions to harmonize the SAMSEG and FreeSurfer statistical > files: > 1. "samseg.stats" file is not compliant with the "asegstats2table" > application so I was not able to generate a final CSV file with volumetric > results > Is there another solution? The same stats should be in seg.stats > 2. "samseg.stats" file does not provide large brain structures like > "BrainSegNotVent" or "SupraTentorialNotVent", is there a way to get them > calculated? No, not easily. There is a sbtiv.stats file with intracranial volume in it.
> 3. "samseg.stats" file does not provide left/right or global cortical > thickness, is there a command line to execute to get these extra values? No, you have to have a surface-based analysis for that > Thanks. > > Best, > Florent > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
