I don't think it is a good idea to try to PVC the amygdalar
segmentations as they are too small.
On 4/28/2022 4:27 PM, Tun, Samantha wrote:
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Hello Freesurfer Devs!
I am attempting to extract the tau uptake in the amygdalar
segmentations. I ran this command:
mri_segstats --seg
rh.hippoAmygLabels-T1.v21.FS60.FSvoxelSpace.mgz --i anat_resliced.mgz
--sum
rHA_stats.dat
to try and calculate the tau uptake.
I was able to get an output, but I am unsure how to proceed from here.
I basically want to get the pvc uptake of the amygdalar and
hippocampal subfields scaled to the pons. I don’t think I can run the
mri_gtmpvc command, so if you had any insight on how to calculate the
scaled uptake of tau in the subfields, let me know!
Best,
Samantha
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