Does orig.mgz exist in /usr/local/freesurfer/7.2.0/subjects/home/mri/orig?
Also be aware that we are phasing out register.dat files in favor or
using lta files. Also, the tk tools (tkregister2, tkmedit, tksurfer) are
officially depricated. Try using tkregisterfv instead.
On 6/28/2022 4:38 PM, Rachel Wagner wrote:
External Email - Use Caution
Oh thank you, good catch! I am now encountering the issue below:
developer@developer-VirtualBox:~$ tkregister2 --s home --mov
updated.mgz --regheader --reg register.dat --surf orig
tkregister_tcl /usr/local/freesurfer/7.2.0/tktools/tkregister2.tcl
surfname set to orig
INFO: no target volume specified, assuming FreeSurfer orig volume.
target volume orig
movable volume updated.mgz
reg file register.dat
LoadVol 1
ZeroCRAS 0
$Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $
Diagnostic Level -1
ERROR: could not find orig as either mgz or COR
/usr/local/freesurfer/7.2.0/subjects/home/mri/orig
Could this be another typo on my part or should I be using a different
path?
Thanks again!
Rachel
*From: *Wighton, Paul <mailto:pwigh...@mgh.harvard.edu>
*Sent: *June 28, 2022 4:36 PM
*To: *freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
*Subject: *Re: [Freesurfer] Command Not Found
You don't often get email from pwigh...@mgh.harvard.edu. Learn why
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Hi Rachel,
Are you trying to run tkregister2? Looks like you forgot the t at the
start of the command.
-Paul
*From:*freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Rachel Wagner
<rwag...@uwo.ca>
*Sent:* Tuesday, June 28, 2022 4:29 PM
*To:* freesurfer@nmr.mgh.harvard.edu <Freesurfer@nmr.mgh.harvard.edu>
*Subject:* [Freesurfer] Command Not Found
* External Email - Use Caution *
Hello,
Thank you for your help! I am trying to register my spm image and am
getting the following error:
developer@developer-VirtualBox:~$ kregister2 --s home --mov
updated.mgz --regheader --reg register.dat --surf orig
kregister2: command not found
Is my path not set correctly?
Thanks again,
Rachel Wagner
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