Pick a hemisphere (either lh or rh). Also, you should verify that your
volume overlays on fsaverage correctly with something like
tkmeditfv fsaverage orig.mgz -surfs -fminmax .01 1 -ov
rReslice_Combined_roi_meanRD.nii -reg
$FREESURFER_HOME/average/mni152.register.dat
On 7/11/2022 6:23 PM, Rachel Wagner wrote:
External Email - Use Caution
Hello everyone,
I am trying to display my lesion map I created in Matlab on a cortical
surface, and am getting the following error:
developer@developer-VirtualBox:~$ mri_vol2surf --mov
rReslice_Combined_roi_meanRD.nii --mni152reg --trgsubject fsaverage
--hemi lhrh --out lh_spm.mgh --projfrac-max 0 1 .1
srcvol = rReslice_Combined_roi_meanRD.nii
srcreg = /usr/local/freesurfer/7.2.0/average/mni152.register.dat
srcregold = 0
srcwarp unspecified
surf = white
hemi = lhrh
trgsubject = fsaverage
surfreg = sphere.reg
ProjFrac = 0.5
thickness = thickness
reshape = 0
interp = nearest
float2int = round
GetProjMax = 1
INFO: float2int code = 0
Done loading volume
INFO: This REGISTER_DAT transform is valid only for volumes between
COR types with c_(r,a,s) = 0.
Input reg is register.dat
-------- original matrix -----------
0.99753 -0.00732 0.01760 0.95709;
-0.01296 -0.00926 0.99706 -17.81596;
-0.01460 -1.00094 0.00244 -18.54964;
0.00000 0.00000 0.00000 1.00000;
-------- original matrix -----------
Reading surface /usr/home//fsaverage/surf/lhrh.white
error: No such file or directory
error: MRISread(/usr/home//fsaverage/surf/lhrh.white): could not open file
error: No such file or directory
error: mri_vol2surf: could not read surface
/usr/home//fsaverage/surf/lhrh.white
Could anyone help me fix this? I am very new to this software and need
to have this results ready for my supervisor if possible!
Thank you,
Rachel
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