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Hi Freesurfer experts,
I have been trying to segment thalamus using segment_subregions command
available in freesurfer 7.3.2.
Unfortunately, I have been encountering the following error.
IN-NSCC-050385:~ mdalamin$ segment_subregions thalamus --cross sub-0023
Step 1: preprocessing inputs for thalamus segmentation
Running command: mri_convert
/var/folders/3b/zd9p0z7s6nx_m1_xyg0tqqj0dgxn6r/T/tmpzh3k0uay/tempImage.mgz
/var/folders/3b/zd9p0z7s6nx_m1_xyg0tqqj0dgxn6r/T/tmpzh3k0uay/tempImage.mgz
-odt float -rt cubic -vs 0.5 0.5 0.5
Preprocessing took 6 seconds
Step 2: aligning atlas to reference segmentation
Traceback (most recent call last):
File "/Applications/freesurfer/7.3.2//python/scripts/segment_subregions",
line 99, in <module>
subregions.run_cross_sectional(args.structure, parameters)
File
"/Applications/freesurfer/7.3.2/python/packages/freesurfer/subregions/process.py",
line 52, in run_cross_sectional
model.align_atlas_to_seg()
File
"/Applications/freesurfer/7.3.2/python/packages/freesurfer/subregions/core.py",
line 240, in align_atlas_to_seg
mask = mask.resize(1, interp='nearest')
TypeError: resize() got an unexpected keyword argument 'interp'
Any suggestions to troubleshoot this problem?
Kind regards
*Md. Mamun Al-Amin, PhD*
*---------------------------*
*Postdoctoral Fellow*
*Stark Neuroscience Research Institute*
*Indiana University School of Medicine*
*320 W. 15th Street, NB Bldg Rm 103*
*Indianapolis, IN 46202*
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