Sam way as with unpacksdcmdir, ie, by specifying -run run subdir format
stemname
Another way it to use the -auto-runseq format , eg -auto-runseq mgz
this will output all the runs preprending the run number and protocol name
If you are using 7.3.X, then you can also add --dcm2niix which will
speed things up a lot
On 9/23/2022 8:26 AM, O'Dor, Sarah,PHD wrote:
Good afternoon,
Quick question about unpacking:
The instructions I have from a previous staff member said to do this:
In folder where files are going, type: unpacksdcmdir -src <location of
scans> -targ . -scanonly scanout.txt
So what I submit is:
unpacksdcmdir -src
/cluster/archive/338/siemens/Prisma_fit-67026-20220208-132737-000260
-targ . -scanonly scanout.txt
When I do that, it just makes the files:
dicomdir.sumfile scanout.txt unpack.log
I’m trying to use the dcmunpack command instead. From following the
template on the website, I’ve been trying the following commands:
[pandas:Pandas57UC] (nmr-stable6-env) dcmunpack -src
/cluster/archive/338/siemens/Prisma_fit-67026-20220208-132737-000260
-index-out dcm.index.dat
{lots of other content here, so let’s skip to….}
dcmunpack done
[pandas:Pandas57UC] (nmr-stable6-env) dcmunpack -src
/cluster/archive/338/siemens/Prisma_fit-67026-20220208-132737-000260
-index-in dcm.index.dat -targ .
ERROR: need input runs
How should I specify input runs?
Thanks,
Sarah
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