External Email - Use Caution I haven’t seen anyone answer this on the list, but I hope someone replied off-list.
If this a human subject, you might be able to convert the freesurfer output to something Connectome Workbench can read: https://secure-web.cisco.com/17wlnsQY5z19UrxrrKl-L3S8ST1x7RPRyaM-ySwrNBbtKgfWOrn0Z_ufOrGGDDoLc6XwoFmFIV0R3VUSNzg2eIxOZ8FUMC0MXI-199gpkhEuzhmMI--VWthtHkeldHHunjdqNWZNrMizo1AaVFuuxVECkqlnaQ73jOs4Fz1CaFyBs9gZZpxE9L63OohPIqP3qWlY8q9mYiCP5yPZ62aYj6m0yw8yWkXUl3lLVdDMsXZGAXk7q-kYX9yKJtJzyMTKUAsm-BDd8PWpyWQbnPCs3ZTePm3Dg8TR-95BrXsH-LihDN18y4sGSPuxOWMeyY7vRkS_8BWe78p4wAYG_DVLRGw/https%3A%2F%2Fgithub.com%2FWashington-University%2FHCPpipelines%2Fblob%2Fmaster%2FPostFreeSurfer%2Fscripts%2FFreeSurfer2CaretConvertAndRegisterNonlinear.sh Then you can get your hands on a 32k_fs_LR flat map and draw on that. You can then view the borders on midthickness, inflated, or flat as desired. Don’t know about the zig zag thing. From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Andy Kim <andyjh....@mail.utoronto.ca> Date: Friday, July 14, 2023 at 7:45 AM To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] Can I use Freeview (tksurferfv) Tools on surface? * External Email - Caution * External Email - Use Caution Dear FreeSurfer Developers, Hi. I want to manually draw a rectangular ROI on flat map. I tried "PolyLine voxel draw" of ROI edit tool (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1CzOEVJLskuT1eBHdHWkZm9Uv9RdwguBc8D3xEjfGkDT12yAPAdsSHCRhZ8-zNlCVsWxibU9dp-900RpQvhoctxKveKHL1j_AI35XIKbXDX9wp1615bn21Il1OWcZaNVZC9f9ehspJafFIYrZBN7f9g-nmYVHlKgC0G1X4fYrqFAs7ZkgBdA0k7hr0ioCQOscn-lAm8Q7BPPKkXxpY8X0qsPk8RoRR6eJAXsL3bqP4FHCEXQNkay0xisjE6H8WbJ4QcPWqqgdleY-1McrfWwmNWTMP7xANVqJ__zSt51VNPJqqAYzfy6tW0fc6uC16sxVLsrj6zVudFyMZeZVDHfuPw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFreeviewGuide%2FFreeviewTools%2FRoiEdit<https://secure-web.cisco.com/1uYpRPHzaQ-b275n3Qt2rqUmDAbInkPLAno41z_mXOvA9D8qAugBQR0S6zkInLYQn1Xl3TOY0oJFkbI6RPoALUmxV8oGNWxHym5WLqi_7QJGx6lX_2lR2STOnJi8s5vxdZ04_fp6b35pehxBr4-l3lWS9mctgTSjBy8AoiErcgueL8xMXgwARppZnFQsp5XATWNDB0WoToTsJF83bHPyUNGu6Y5lPXBkaByhwQCqmvt868YGR7krXkrVJxtOzaK6CXTOosaqrURervPHT_5_uQcCLb2pTXaSosaJebFrwRElEgl4lxY-KXxNejDq39JdB4yHXidLiBk2g2KtN7BJOhw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFreeviewGuide%2FFreeviewTools%2FRoiEdit>). On the other hand, unfortunately, it seems that it only works in 3d volume space. So, I tried "Path/Custom FIll" -> pointing 4 vertices of a rectangle -> "Make Closed Path". But this time, the vertices were not connected straight. The lines were zigzag. Could you tell me how to draw a rectangular ROI with straight lines. Furthermore, if possible, could you explain how zigzag lines form? Thank you in advance. Kind Regards, Andy (Junghyun) Kim ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
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