Tena Sakai wrote: > Hi Nate, > > I am still not there, though I am getting closer... > > I changed the port to 8888 in universe_wsgi.ini and > Here's what appears on my screen: > galaxy.web.buildapp DEBUG 2011-02-17 13:42:08,285 Enabling 'eval > exceptions' middleware > galaxy.web.buildapp DEBUG 2011-02-17 13:42:08,286 Enabling 'trans logger' > middleware > galaxy.web.buildapp DEBUG 2011-02-17 13:42:08,286 Enabling 'config' > middleware > galaxy.web.buildapp DEBUG 2011-02-17 13:42:08,287 Enabling > 'x-forwarded-host' middleware > Starting server in PID 28721. > serving on http://127.0.0.1:8888 > > When I try to go there on my browser, the complaint from browser > (I used both safari and firefox) is: > Firefox can't establish a connection to the server at vixen:8888. > Or > Safari can¹t open the page ³http://vixen:8888/² because Safari can¹t > connect to the server ³vixen².
See the 'host =' line in universe_wsgi.ini. To listen on the network (instead of just localhost), change the value to: host = 0.0.0.0 --nate > But when I change 8888 to 8080, I do get a page from tomcat. > > I see that the process is running: > $ ps axl | grep 28721 > 0 1026 28721 28588 15 0 390520 83456 finish Tl pts/9 0:14 python > ./scripts/paster.py serve universe_wsgi.ini > 0 1026 28781 27316 16 0 51116 668 pipe_w S+ pts/9 0:00 grep > 28721 > > Any clue, why I can't get there by browser? > > Thank you. > > Regards, > > Tena Sakai > > > > On 2/17/11 12:57 PM, "Nate Coraor" <[email protected]> wrote: > > > Tena Sakai wrote: > >> Hi Nate, > >> > >> Thank you for your reply. > >> > >> I am getting there, but I need a bit more help. > >> > >> Firstly, yes, I had an alias hg (which was "history | grep $1"). > >> I got rid of it and hg is working fine. > >> > >> Secondly, I installed the latest version of zlib (1.2.5) and > >> I can go further with "sh run.sh", but it hangs after it tells > >> me: > >> File "/usr/local/lib/python2.5/SocketServer.py", line 341, in > >> server_bind > >> self.socket.bind(self.server_address) > >> File "<string>", line 1, in bind > >> socket.error: (98, 'Address already in use') > >> > >> When I point my browser to http://vixen:8080 (vixen is the very > >> machine on which I am implementing galaxy), a tomcat page comes > >> up (telling me that tomcat is running fine). > >> > >> Here's my question: Is there a way to run galaxy on ports other > >> than 8080? > > > > Yes, in the file universe_wsgi.ini in the root of the Galaxy directory, > > one of the options near the top of the file is 'port ='. This can be > > changed to whatever you prefer. > > > > --nate > > > >> > >> Thank you! > >> > >> Regards, > >> > >> Tena Sakai > >> > >> PS: Thank you for updating the link on wiki page. > >> > >> On 2/17/11 9:57 AM, "Nate Coraor" <[email protected]> wrote: > >> > >>> Nate Coraor wrote: > >>>>> > >>>>> $ uname -v > >>>>> #1 SMP Tue Jul 22 18:01:05 EDT 2008 > >>>>> > >>>>> $ uname -r > >>>>> 2.6.9-78.0.1.ELsmp > >>> > >>> RHEL 4, I believe? > >>> > >>>>> $ cd galaxy-dist > >>>>> $ sh run.sh > >>>>> <...lots of lines here...> > >>>>> Fetch successful. > >>>>> <...more lines here...> > >>>>> ysam/csamtools.py", line 6, in __bootstrap__ > >>>>> ImportError: > >>>>> /home/tsakai/.python-eggs/pysam-0.1.1_kanwei_90e03180969d-py2.5-linux-x86_ > >>>>> 64 > >>>>> -ucs2.egg-tmp/pysam/csamtools.so: undefined symbol: deflateSetHeader > >>>>> > >>>>> $ echo $? > >>>>> 1 > >>>>> > >>>>> So, I am lost now. Can somebody please give me a tip as to how to > >>>>> proceed? > >>>> > >>>> I'll dig in to this last bit and get back to you ASAP. > >>> > >>> It would appear that your zlib does not contain deflateSetHeader, which > >>> was added to zlib in version 1.2.2.1, released in 2004. RHEL 4.X > >>> apparently ships with zlib 1.2.1.2. If you have a newer zlib installed > >>> somewhere, you can work around this problem by setting $LD_LIBRARY_PATH > >>> to point to the directory with the newer libz.so.1. LD_LIBRARY_PATH is > >>> a hack so this is not ideal, but you may not want to override libz > >>> globally by changing something like /etc/ld.so.conf. > >>> > >>> --nate > >> > >> > > _______________________________________________ To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
