Hi again, Sorry to maybe not understand how to get started, but I'm trying for something even without the added complexity of a workflow.
If you could point me into the right direction: how would I have a single tool where on the tool form there is a multi-select of certain datasets in the user's history. The user multi selects X datasets in the form and hits submit and Galaxy will launch X tool jobs (on for each of the datasets) at the same time in the history. How do I go about doing this? Sorry for being daft, Leandro On Tue, Apr 19, 2011 at 4:34 PM, Dave Walton <dave.wal...@jax.org> wrote: > Is the server below down? I'm trying to get there this morning and having > no luck... > > > https://wiki.nbic.nl/index.php/NBIC_Galaxy_Hackathon_project#Loop_over_files > _in_a_directory > > Dave > > > On 4/15/11 12:16 PM, "Pieter Neerincx" <pieter.neeri...@gmail.com> wrote: > > > Hi, > > > > You're not alone with this request! Unfortunately I wasn't able to join > the > > 2-day Galaxy Hackathon, but I heard from a colleague who just came back > that > > this was one of the topics they worked on. At the end of the hackathon > they > > had a working prototype: > > > > > https://wiki.nbic.nl/index.php/NBIC_Galaxy_Hackathon_project#Loop_over_files_i > > n_a_directory > > > > Since they had only 2 days, it will need some polish, but I heard this > hack > > already made it into the development branch of Galaxy, so we may see > something > > like this in the near future :) > > > > Cheers, > > > > Pi > > > > On Apr 15, 2011, at 4:28 PM, Dave Walton wrote: > > > >> I've essentially asked the same question of the list in the past and > gotten > >> no real response. > >> > >> I have the same interest, but from a workflow perspective. > >> > >> * A module that allows me to select multiple datafiles (say fastq files) > >> * Then pass each data file to a separate instance of a workflow that > runs > >> tophat and cufflinks > >> * then another module that takes the final outputs of each of the > workflow > >> runs and sends them to a final module that merges results. > >> > >> I am attempting to implement something like this using the API, though > the > >> API is still pretty green from my perspective. > >> > >> I think functionality like this built into the workflow editor would be > a > >> great addition. > >> > >> Dave > >> > >> On Apr 15, 2011, at 8:14 AM, Leandro Hermida wrote: > >> > >>> Hi everyone, > >>> > >>> I was wondering what would be the way in Galaxy to program the > following: > >>> > >>> - User clicks on a tool and form is displayed > >>> - They use a select multi menu in the form to pick lets say X multiple > >>> datasets from their history > >>> - When they click submit the tool launches X number of jobs in the > history, > >>> on for each of the datasets selected. > >>> > >>> I have a common use case where users have to manually run the same tool > over > >>> and over again with the same parameters for each dataset of interest in > >>> their history. I would be great to be able programmatically or > otherwise > >>> with Galaxy to be able to use one form and multi select the datasets > and > >>> then launch the parallel jobs in one go. > >>> > >>> regards, > >>> Leandro > >>> > >>> <ATT00001..txt> > >> > >> > >> ___________________________________________________________ > >> Please keep all replies on the list by using "reply all" > >> in your mail client. To manage your subscriptions to this > >> and other Galaxy lists, please use the interface at: > >> > >> http://lists.bx.psu.edu/ > > > > ------------------------------------------------------------- > > mobile: +31 6 143 66 783 > > e-mail: pieter.neeri...@gmail.com > > skype: pieter.online > > ------------------------------------------------------------- > > > >
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