Hi Nate,
On Mon, May 9, 2011 at 3:30 PM, Nate Coraor <n...@bx.psu.edu> wrote: > Matthew Conte wrote: > > Good afternoon, > > > > I'm having several problems with my local galaxy install which may or may > > not be related to one another. > > > > The first problem I'm having is with the "Display data in browser" > feature. > > Some files type formats (fastqsanger, fasta) display fine. However, > other > > file type formats (png, svg, txt) simply do not display at all. I have > > debugging turned on, but do not see any error within the browser or > within > > the galaxy log or web server log after clicking the "Display data in > > browser" eyeball icon. It is simply a blank middle panel. > > > > The next problem I'm having has to do with downloading files. Firefox > and > > Safari will download any file from a history, but will just create an > empty > > file on the client. Again, neither log file show an error with a clue to > > the problem. Chrome will download some files, but other files give me an > > error and won't download: > > > > *This webpage is not available* > > * > > * > > *error 100 (net::ERR_CONNECTION_CLOSED): The server unexpectedly closed > the > > connection.* > > > > In this case, I don't see anything in the log files either. > > Hi Matt, > > Are you using the sendfile/x-accel-redirect configurations of > Apache/nginx? Are all of these issues the same if you connect directly > to Galaxy's built-in webserver instead of through a proxy server? > Yep, I'm using mod_xsendfile-0.12 for apache and x-accel-redirect for nginx, but both webservers are showing the same problems. If I use Galaxy's built-in webserver, I don't have the above problems, so the problem is probably related to the proxy server. I just can't seem to pinpoint the problem. > > > > > > > Finally, I'm also having a problem logging in from the main welcome page. > > It seems to authenticate fine (I get an error when I put in the wrong > > password and don't when I put in the correct password), but it doesn't > > actually log me in and just takes me back to the main welcome page. > > > > For this problem, I do get an error in the galaxy log: > > > > *Exception happened during processing of request > > from---------------------------------------- * > > * self.wfile.flush()* > > * File "/raid/galaxy_user/lib/python2.6/socket.py", line 297, in flush* > > * self._sock.sendall(buffer(data, write_offset, buffer_size))* > > *error: [Errno 32] Broken pipe* > > I see this occasionally on python 2.6, and it's usually just a harmless > intentional interrupted connection. As above, can you test login via > the welcome page without the use of the proxy server and report back > whether there's any difference? > > Thanks, > --nate > This also works normal with the built-in webserver but not as a proxy server. Thanks, Matt > > > > > > > I am able to log in via other routes, such as going to "Options->Saved > > Histories" which brings up an error "You must be logged in" to work with > > multiple histories and links to /galaxy/user/login?webapp=galaxy and from > > there I can log in fine. This happens with both admin and normal users. > It > > is not a huge problem since I have a work around, but it would be nice to > > figure out the problem so I don't have to make my users do the same. > > > > I should mention that I'm running galaxy-dist changeset 50e249442c5a on > > CentOS. The problems seem to be web server independent too as they appear > > with both Apache and Nginx. I've used the following instructions, but I'm > > just not seeing where the problem(s) is/are: > > > > https://bitbucket.org/galaxy/galaxy-central/wiki/Config/ProductionServer > > https://bitbucket.org/galaxy/galaxy-central/wiki/Config/ApacheProxy > > https://bitbucket.org/galaxy/galaxy-central/wiki/Config/nginxProxy > > > https://bitbucket.org/galaxy/galaxy-central/wiki/Config/WebApplicationScaling > > > > > > Thanks, > > Matt > > > > -- > > Matthew Conte > > Bioinformatics Scientist > > Department of Biology > > University of Maryland > > mco...@umd.edu > > > ___________________________________________________________ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > > > http://lists.bx.psu.edu/ > >
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