On Jun 17, 2011, at 2:12 PM, Edward Kirton wrote: > yes, your web server needs to be configured as an sge submit host to work > seamlessly with galaxy. alternatives include submitting the jobs to the > cluster outside of galaxy using another script that will either ssh or use > expect. these alternatives are messy and to be avoided unless necessary. > conditions which would require these solutions include if you wish to submit > to multiple clusters or queues (e.g. user-specific queues, > application-specific clusters) or require cluster jobs to be submitted as > individual users rather than as the galaxy user (eg. for accounting).
Thanks for the reply Edward and Nate. We got it working by configuring galaxy system as a submit host to master sge node, but I forgot to follow-up on the thread later on. Thanks again for your inputs.. -- Shantanu. > > On Mon, May 16, 2011 at 10:44 AM, Shantanu Pavgi <pa...@uab.edu> wrote: > Just want to confirm SGE configuration again. As mentioned earlier we started > with a separate galaxy VM without any SGE installation. The SGE master node > is installed on a separate system altogether. As I understand from your > reply, we will need to install SGE on the galaxy VM first and configure it as > a submit host with the main SGE master node. Is that correct? Are their any > alternative approaches? > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
