It's a feature although arguably necessitated by what some might consider a design bug in FastQC
FastQC insists on writing the html report with links to the generated images which it writes to a subdirectory. That won't work for Galaxy's html datatype, so the wrapper script unpacks that structure into a Galaxy html datatype and adjusts the links in the html so they work correctly when viewed in a history. On Fri, Jul 29, 2011 at 2:47 PM, Chorny, Ilya <icho...@illumina.com> wrote: > I am testing the latest galaxy central distribution by running FASTQC. It > creates a directory call dataset_*_file in the job_working_directory and > then copies that directory to file_path when the job is complete. Is that on > purpose or is that a bug? > > > > Thanks, > > > > Ilya > > > > Ilya Chorny Ph.D. > > Bioinformatics – Intern > > icho...@illumina.com > > 858-202-4582 > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ > -- Ross Lazarus MBBS MPH; Associate Professor, Harvard Medical School; Director of Bioinformatics, Channing Lab; Tel: +1 617 505 4850; Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444; ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
