Hi
I apologize, if this problem has already been solved/discussed. I went
through the e-mail repos, but couldn't find anything.
With a little delay, I am in the process of upgrading our local Galaxy
server. Currently, I am running a few tests with the "June 23, 2011
(720455407d1c)" release.
I noticed the following problem during start-up of a fresh download:
galaxy.tools DEBUG 2011-08-16 16:15:06,567 Loading section: SNP/WGA:
Data; Filters
galaxy.tools DEBUG 2011-08-16 16:15:06,630 Loaded tool: upload1 1.1.3
galaxy.tools ERROR 2011-08-16 16:15:06,639 error reading tool from path:
data_source/access_libraries.xml
Traceback (most recent call last):
File "/galaxy/galaxy_test/galaxy_dist/lib/galaxy/tools/__init__.py",
line 77, in load_tool
tool = self.load_tool( os.path.join( self.tool_root_dir, path ) )
File "/galaxy/galaxy_test/galaxy_dist/lib/galaxy/tools/__init__.py",
line 169, in load_tool
return ToolClass( config_file, root, self.app )
File "/galaxy/galaxy_test/galaxy_dist/lib/galaxy/tools/__init__.py",
line 340, in __init__
self.parse( root )
File "/galaxy/galaxy_test/galaxy_dist/lib/galaxy/tools/__init__.py",
line 385, in parse
self.interpreter = command.get("interpreter", None)
AttributeError: 'NoneType' object has no attribute 'get'
galaxy.tools DEBUG 2011-08-16 16:15:06,687 Loaded tool: rgClean1 1.0.0
and as a consequence: the tool "Access Libraries stored locally" is not
available. Does anybody know, what went wrong? - The "__init__.py" is
a little bit too big of a beast for me ;)
We use this tool quite a lot for general access to data libraries (in
addition to the drop down in the top menu bar)
Thank you very much for any help
Regards, Hans
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