Hi Ilya, Sorry, I haven't yet had a chance to check out your code. Are you using the username column of the user table to determine the local username? This would then be job.user.username.
--nate Chorny, Ilya wrote: > So I figured out that it is job/runners/__init__.py that does the cleanup. > But now I can't figure out how to pass the galaxy username to my script to > change the permission back. I thought os.getlogin() would give me the right > username but it returns my user name and not the galaxy user. Thoughts? > > Thanks, > > Ilya > > From: galaxy-dev-boun...@lists.bx.psu.edu > [mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Chorny, Ilya > Sent: Tuesday, August 23, 2011 1:46 PM > To: galaxy-dev@lists.bx.psu.edu > Subject: [galaxy-dev] What script updates the umask of database/files/* and > deletes database/job_working_directory > > When running as the actual user in drama, I made it so the .dat files are not > initially created so that when a tool moves data from the a temp directory to > the out .dat file it will not fail. (i.e. unix does not allow moving a file > owned by one user to a file owned by another user because mv carries the > attributes of the original file). Now I want to change the ownership of the > files through a sudo call at the end. Which script is run at the end to clean > things up? > > Thanks, > > Ilya > > > Ilya Chorny Ph.D. > Bioinformatics Scientist I > Illumina, Inc. > 9885 Towne Centre Drive > San Diego, CA 92121 > Work: 858.202.4582 > Email: icho...@illumina.com<mailto:icho...@illumina.com> > Website: www.illumina.com<http://www.illumina.com> > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
