Whyte, Jeffrey wrote:
> Thanks for the information, Nate.
>
> I installed Python as you described, and the error I get now is pasted below.
> I appreciate your help.
>
> Jeff
>
> [~/galaxy-dist] myuserid 03:06 PM > ./run.sh
> Some eggs are out of date, attempting to fetch...
> Warning: MarkupSafe (a dependent egg of Mako) cannot be fetched
> Warning: simplejson (a dependent egg of WebHelpers) cannot be fetched
> pysam 0.4.2 couldn't be downloaded automatically. You can try
> building it by hand with:
> python scripts/scramble.py -e pysam
> Fetch failed.
> [~/galaxy-dist] myuserid 03:06 PM >
Could you report back with the output of:
% python ./scripts/get_platforms.py
?
Thanks,
--nate
> ________________________________________
> From: Nate Coraor [n...@bx.psu.edu]
> Sent: Friday, September 02, 2011 1:16 PM
> To: Whyte, Jeffrey
> Cc: galaxy-dev@lists.bx.psu.edu
> Subject: Re: [galaxy-dev] Galaxy egg fetching error? Mac OS X 10.7 (Lion)
>
> Whyte, Jeffrey wrote:
> > Hi,
> >
> > I've been having trouble running a local instance of Galaxy on a Mac Pro
> > after upgrading to OS X 10.7 (Lion). My Python version is 2.7.1 and
> > Mercurial is 1.9.1 for MacOS X 10.7. I don't have any MacPorts installed.
> >
> > The error I see after running the startup script is pasted at the end of
> > this message. Thanks in advance for any help or advice.
> > jjw
>
> Hi Jeffrey,
>
> We haven't yet gotten our dependencies up to speed on Lion. Could you
> grab a copy of Python from python.org and use this? It'll install under
> /Library/Frameworks/Python.framework, just add the correct bin/
> directory to the front of your $PATH and start Galaxy as normal.
>
> Sorry for the inconvenience,
> --nate
>
> >
> > -----
> >
> > [~/galaxy-dist] myuserid 10:11 AM > ./run.sh
> > Some eggs are out of date, attempting to fetch...
> > Warning: MarkupSafe (a dependent egg of Mako) cannot be fetched
> > Warning: decorator (a dependent egg of sqlalchemy-migrate) cannot be fetched
> > Warning: simplejson (a dependent egg of WebHelpers) cannot be fetched
> > Traceback (most recent call last):
> > File "./scripts/fetch_eggs.py", line 30, in <module>
> > c.resolve() # Only fetch eggs required by the config
> > File "/Users/myuserid/galaxy-dist/lib/galaxy/eggs/__init__.py", line 345,
> > in resolve
> > egg.resolve()
> > File "/Users/myuserid/galaxy-dist/lib/galaxy/eggs/__init__.py", line 195,
> > in resolve
> > return self.version_conflict( e.args[0], e.args[1] )
> > File "/Users/myuserid/galaxy-dist/lib/galaxy/eggs/__init__.py", line 226,
> > in version_conflict
> > r = pkg_resources.working_set.resolve( ( dist.as_requirement(), ), env,
> > egg.fetch )
> > File
> > "/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/pkg_resources.py",
> > line 565, in resolve
> > raise DistributionNotFound(req) # XXX put more info here
> > pkg_resources.DistributionNotFound: numpy==1.6.0
> > Fetch failed.
> > [~/galaxy-dist] myuserid 10:12 AM >
> >
> >
> >
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