Hi,
I restarted my Galaxy server this morning (it was working fine before), but now
I'm getting the following error:
Error at initialization of module heapycTraceback (most recent call last):
File "/export/home/alex/Apps/galaxy-dist/lib/galaxy/web/buildapp.py", line
82, in app_factory
app = UniverseApplication( global_conf = global_conf, **kwargs )
File "/export/home/alex/Apps/galaxy-dist/lib/galaxy/app.py", line 78, in
__init__
self.memdump = memdump.Memdump()
File "/export/home/alex/Apps/galaxy-dist/lib/galaxy/util/memdump.py", line
24, in __init__
self.heapy = guppy.hpy()
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/__init__.py",
line 35, in hpy
return r.guppy.heapy.Use
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py",
line 44, in __getattr__
return self._share.getattr(self, name)
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py",
line 187, in getattr
d = self.getattr2(inter, cache, owner, name)
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py",
line 202, in getattr2
x = self.getattr_package(inter, name)
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py",
line 250, in getattr_package
x = self.makeModule(x, name)
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py",
line 310, in makeModule
return Share(module, self, module.__name__, Clamp)
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py",
line 176, in __init__
getattr(inter, name)
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py",
line 44, in __getattr__
return self._share.getattr(self, name)
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py",
line 187, in getattr
d = self.getattr2(inter, cache, owner, name)
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py",
line 204, in getattr2
x = self.getattr3(inter, name)
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py",
line 272, in getattr3
pa = getattr(pa, at)
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py",
line 44, in __getattr__
return self._share.getattr(self, name)
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py",
line 187, in getattr
d = self.getattr2(inter, cache, owner, name)
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py",
line 202, in getattr2
x = self.getattr_package(inter, name)
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/etc/Glue.py",
line 239, in getattr_package
x = __import__(self.makeName(name), globals(), locals())
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/heapy/View.py",
line 556, in <module>
prime_builtin_types()
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/heapy/View.py",
line 539, in prime_builtin_types
import guppy.heapy.heapyc
File
"/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/sets/__init__.py",
line 3, in <module>
from setsc import BitSet # base bitset type
ImportError:
/export/home/alex/Apps/galaxy-dist/eggs/guppy-0.1.8-py2.7-linux-x86_64-ucs2.egg/guppy/sets/setsc.so:
undefined symbol: _PyLong_AsScaledDouble
I think it downloaded a new package when I tried to start it; I think I may
have found a relevant thread with a patch at
http://aur.achlinux.org/packages.php?ID=43710
but I'm not sure how to go about applying it.
Thanks,
Alex Bigelow
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
