So we came up with a work around and I wouldn't mind getting your opinion on
it. Specifically with respect to passing cookie_path. I could not figure out
how to get the proxy prefix from the universe_wsgi.ini file via the $__app__
call. Also you mention in the wiki the the $__app__ may get deprecated.
Thanks,
Ilya
We copied the encryption code (i.e)
def encode_id(dataset_id,id_secret):
id_cipher = Blowfish.new(id_secret)
s = dataset_id
s = ( "!" * ( 8 - len(s) % 8 ) ) + s
encrypted_id = id_cipher.encrypt( s ).encode( 'hex' )
return encrypted_id
and we passed to the too wrapperl:
-i input -i $input.dataset.id
as well as
--id_secret=$__app__.config.id_secret
--cookie_path=$__app__.config.cookie_path
-----Original Message-----
From: Chorny, Ilya
Sent: Monday, October 17, 2011 11:10 AM
To: Chorny, Ilya; James Taylor
Cc: galaxy-dev
Subject: RE: [galaxy-dev] how do I pass the URL of the input and output files
to my tool wrapper?
Would it be difficult to add the url as an attribute of the input and output
parameters ($param.url)? If you point me to where these values are set, I can
try to make the changes to the code.
Thanks,
Ilya
-----Original Message-----
From: galaxy-dev-boun...@lists.bx.psu.edu
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Chorny, Ilya
Sent: Sunday, October 16, 2011 7:36 AM
To: James Taylor
Cc: galaxy-dev
Subject: Re: [galaxy-dev] how do I pass the URL of the input and output files
to my tool wrapper?
PDF report.
Sent from my iPhone
On Oct 15, 2011, at 7:36 PM, "James Taylor" <ja...@jamestaylor.org> wrote:
> Excerpts from Chorny, Ilya's message of 2011-10-14 23:46:25 +0000:
>> Anyone know if it possible to pass the url (shown in the eye ball) to a tool
>> wrapper?
>
> Ilya, this isn't currently supported because it breaks the abstraction
> between the web interface and tools (tools shouldn't know they are
> being invoked by a web application). What are you trying to achieve with this?
> Is this for a tool generating an HTML report?
> --
> James Taylor, Assistant Professor, Biology / Computer Science, Emory
> University ___________________________________________________________
> Please keep all replies on the list by using "reply all"
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___________________________________________________________
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___________________________________________________________
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