Thanks Jennifer. I was just able to the updated version of Galaxy
installed, and I still have the same issue. After having looked at the
scripts, I am fairly sure it is due to a bug in the -f (force) option of
the data cleanup scripts. I'm not sure, I believe it's similar to issue
I ran into with library datasets:
http://gmod.827538.n3.nabble.com/Bug-importing-from-data-library-to-history-tt3373386.html
Unfortunately, I haven't had time to dig up additional details beyond
what I posted in that thread.
Lance
Jennifer Jackson wrote:
Hello Lance,
Were you able to work out the data issues (perhaps the
datasets/histories were shared?)?
If this issue is still open, there are new features in Galaxy to help
manage data that may be of interest:
http://galaxyproject.org/wiki/Admin/Disk%20Quotas
Thanks!
Jen
Galaxy team
On 8/25/11 9:16 AM, Lance Parsons wrote:
I am running a local instance of Galaxy and I've been trying to sort out
some issue with dataset cleanup. For the most part, things are working
OK running the shell scripts in the recommended order:
delete_userless_histories.sh
purge_histories.sh
purge_libraries.sh
purge_folders.sh
delete_datasets.sh
purge_datasets.sh
I have the number of days set to 10. When I look at the reports webapp
however, it reports that there are "62 datasets were deleted more than
15 days ago, but have not yet been purged, disk space: 12975717335."
These have stuck around now for 45 days (and counting). I have even
tried running the scripts with the -f option to force galaxy to
re-evaluate the datasets to no avail.
Any suggestions? Thanks.
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--
Lance Parsons - Scientific Programmer
134 Carl C. Icahn Laboratory
Lewis-Sigler Institute for Integrative Genomics
Princeton University
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