Hi Makis,

Ordinarily in interactive mode, ctrl+c should work. However, when just using 
'run.sh' certain python/OS combinations experience issues. You'll need to 
manually kill your instance, e.g. using 'kill <pid>'. Next time you start 
Galaxy you can use 'run.sh --reload' which should enable interactive usage with 
ctrl-c working. 

You can also stat Galaxy daemonized using 'sh run.sh --daemon'; stop with sh 
run.sh --stop-daemon'.


Thanks for using Galaxy,

Dan


On Dec 14, 2011, at 3:36 PM, Makis Ladoukakis wrote:

> I couldn't find a way to stop the instance through the terminal. Ctrl+C 
> doesn't work so i just close the terminal itself. Is there a command that 
> stops the instance?
> 
> > Date: Wed, 14 Dec 2011 17:32:41 +0000
> > Subject: Re: [galaxy-dev] New tool not recognised unless i reboot
> > From: p.j.a.c...@googlemail.com
> > To: makis4e...@hotmail.com
> > CC: galaxy-dev@lists.bx.psu.edu
> > 
> > 2011/12/14 Makis Ladoukakis <makis4e...@hotmail.com>:
> > > Dear galaxy users,
> > >
> > > I have downloaded a local instance of Galaxy on my linux distribution
> > > (ubuntu) and i am adding new tools i made myself. To add a new tool i 
> > > follow
> > > all the steps (tool definition file and the modification of tool_conf.xml)
> > > and run 'sh run.sh' for Galaxy to include it in its interface. 
> > > Nevertheless
> > > when i try to do the same later after i close Galaxy, when i run 'sh 
> > > run.sh'
> > > again i get this error:
> > >
> > > socket.error: [Errno 98] Address already in use
> > 
> > Did you stop the old Galaxy instance which is still running and
> > using that network address?
> > 
> > Peter
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