Hello!
I'm running into an error when trying to download a composite dataset
from the history with the floppy disk icon. Here is the error message in
the logs:
galaxy.web.controllers.dataset ERROR 2012-01-18 16:32:10,324 Unable to
remove temporary library download archive and directory
Traceback (most recent call last):
File "/g/funcgen/galaxy-dev/lib/galaxy/web/controllers/dataset.py",
line 285, in archive_composite_dataset
os.rmdir( tmpd )
OSError: [Errno 39] Directory not empty: './database/tmp/tmpkRv28I'
Then I tried replacing the os.rmdir by a shutil.rmtree to see if it
would solve the issue, and here is what I got:
galaxy.web.controllers.dataset ERROR 2012-01-18 16:34:30,239 Unable to
remove temporary library download archive and directory
Traceback (most recent call last):
File "/g/funcgen/galaxy-dev/lib/galaxy/web/controllers/dataset.py",
line 286, in archive_composite_dataset
shutil.rmtree( tmpd )
File
"/g/steinmetz/collaboration/software/CentOS5/opt/Python-2.6.5/lib/python2.6/shutil.py",
line 221, in rmtree
onerror(os.remove, fullname, sys.exc_info())
File
"/g/steinmetz/collaboration/software/CentOS5/opt/Python-2.6.5/lib/python2.6/shutil.py",
line 219, in rmtree
os.remove(fullname)
OSError: [Errno 16] Device or resource busy:
'./database/tmp/tmpwpsShD/.nfs000000000289ccea00000138'
But when I check the contents of the direcory, there is no hidden
.nfs-something file.
Does anyone have an idea why this could occur? Both our testing instance
and our production instance have the same issue, the first being on
galaxy-central and the second on galaxy-dist.
Thanks,
L-A
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