Hi Luciano,
I am going to forward you question over the to galaxy-...@bx.psu.edu
mailing list where the development community will see and provide
feedback to your question:
http://wiki.g2.bx.psu.edu/Support#Mailing_Lists
Best,
Jen
Galaxy team
On 2/26/12 3:19 PM, Luciano Cosme wrote:
I have python 2.7 and it seems to be the problem with it. Just
formated the partition I had linux and fresh install everything and
still have same problem. I did what is recommended here too.
Check your Python version
Galaxy's core functionality is compatible with *Python* versions *2.5*,
*2.6*, and *2.7*. (Version 2.4 support was last included in the November
18, 2011 Distribution
<http://wiki.g2.bx.psu.edu/DevNewsBriefs/2011_11_18#Python_Support>).
Before reporting bugs, please ensure that python --version reports one
of these three versions. If this is not the case, a simple solution is
to manipulate your shell's $PATH variable to place the correct version
first. This can be done for only Python by creating a new directory at
the front of $PATH and creating a symbolic link to python in that
directory:
Toggle line numbers <http://wiki.g2.bx.psu.edu/Admin/Get%20Galaxy#>
1
<http://wiki.g2.bx.psu.edu/Admin/Get%20Galaxy#CA-78df7933c2e9e4b1411a7e60fd3087c684c79664_1>
% mkdir ~/galaxy-python
2
<http://wiki.g2.bx.psu.edu/Admin/Get%20Galaxy#CA-78df7933c2e9e4b1411a7e60fd3087c684c79664_2>
% ln -s /path/to/python2.5 ~/galaxy-python/python
3
<http://wiki.g2.bx.psu.edu/Admin/Get%20Galaxy#CA-78df7933c2e9e4b1411a7e60fd3087c684c79664_3>
%exportPATH=~/galaxy-python:$PATH
On Sat, Feb 25, 2012 at 5:50 PM, Luciano Cosme <cosme.sim...@gmail.com
<mailto:cosme.sim...@gmail.com>> wrote:
*Hi Everyone,
I have been running a Local Galaxy instance for a long time, but
now I am having some problems with uploading data. I am getting the
following error:*
Can't create peek [Errno 2] No such file or
directory:'/home/koala2/galaxy-dist/database/files/000/dataset_13.dat'
*
and from the Terminal:*
127.0.0.1 - - [25/Feb/2012:17:45:00 -0500]"POST /library_common/library_item_updates
HTTP/1.1" 200 -"http://127.0.0.1:8080/library_common/browse_library?
sort=name&operation=browse&f-description=All&f-name=All&f-deleted=False&cntrller=library_admin&async=false&show_item_checkboxes=false&webapp=
galaxy&id=f2db41e1fa331b3e&page=1" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64;
rv:10.0.2) Gecko/20100101 Firefox/10.0.2"
* I reinstalled Unbutu and still having the same issue. I also removed
Postgresql 9.1 and reinstalled it. I that it might be an issue with postgresql
and not Galaxy, but I am not an expert.
Any suggestions will be appreciated.
Thank you.
Luciano
*
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