On Apr 4, 2012, at 2:44 PM, Aaron Gallagher wrote: > On Apr 4, 2012, at 11:35 AM, Langhorst, Brad wrote: > >> This is somewhat akin to the reference area galaxy uses to store reference >> sequences (and their various indices, formats, annotations etc). >> It might be possible to modify galaxy's reference infrastructure to present >> these pre-built reference packages in the same way a user chooses hg19, or >> E. coli K12. The parse JSON option looks easier to me > > This seems like something I should look into, at least. These don't come with > Galaxy, do they?
No, one installs those references independently. see http://wiki.g2.bx.psu.edu/Admin/NGS%20Local%20Setup specifically the section on reference genomes . The more I think about this, the more i think it might make sense to explore setting up you own loc file - might not be that tough. I've never done that, so maybe somebody else who knows more about this will comment on that. Brad -- Brad Langhorst langho...@neb.com 978-380-7564 ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
