On Mar 14, 2012, at 9:16 PM, Huayan Gao wrote: > Yes, I did read the page and followed the instructions. But somehow, I keep > getting the error message, "Forbidden……You don't have permission to access > /galaxy/static/welcome.html…." > I did add +x to all files under folder /static. > -rwxrwxr-x 1 galaxy galaxy 1108 Mar 15 17:19 welcome.html > I did change the rewrite rule path to /home/galaxy/galaxy-dist/... > > Here is the output from error_log of apache server, > (13)Permission denied: access to /galaxy/static/style/history.css denied, > referer: http://server/galaxy/history
Hi Huayan, Maybe you've already fixed this problem, but if not, you'll need to adjust filesystem permissions or <Directory> directives such that the user running the Apache server can access the files in /home/galaxy/galaxy-dist. --nate > I run galaxy through the virtual env. > (galaxy_env)[galaxy@galaxy ~]$ sh galaxy-dist/run.sh > > I could not figure it out what is wrong. Any suggestions? > > Best, > Huayan > > > On 15 Mar, 2012, at 5:49 AM, Nate Coraor wrote: > >> On Mar 12, 2012, at 11:42 PM, Huayan Gao wrote: >> >>> Dear Nate, >>> >>> I have a follow up question for you. >>> >>> If I move galaxy out of my DocumentRoot "/var/www/html" to >>> "/home/galaxy/galaxy-dist" , how to set up my Apache server, that is, >>> httpd.conf file so I can access the website http://server/galaxy? >>> I have a website http://server for something else. I've tried different >>> ways but no luck. >> >> Hi Huayan, >> >> The configuration for this is shown under the heading: >> >> Serving Galaxy at a sub directory (such as /galaxy) >> >> On the Apache Proxy wiki page: >> >> http://wiki.g2.bx.psu.edu/Admin/Config/Apache%20Proxy >> >> --nate >> >>> >>> >>> Best, >>> Huayan >>> >>> >>> >>> On 14 Feb, 2012, at 1:21 AM, Nate Coraor wrote: >>> >>>> On Feb 13, 2012, at 3:08 AM, Huayan Gao wrote: >>>> >>>>> Hi Nate. >>>>> >>>>> I am ok now. >>>>> >>>>> The code I copied from wiki was using galaxy_dist, while my folder name >>>>> is galaxy-dist. >>>>> After I changed the path in the code, the problem solved. >>>> >>>> Hi Huayan, >>>> >>>> I've updated the wiki to refer to galaxy-dist rather than galaxy_dist. >>>> Sorry for the confusion. >>>> >>>> I would suggest moving galaxy out of /var/www/html. From the >>>> documentation: >>>> >>>> Please note that Galaxy should never be located on disk inside Apache's >>>> DocumentRoot. By default, this would expose all of Galaxy (including >>>> datasets) to anyone on the web. >>>> >>>> Galaxy is a proxied application and as such, only the static content like >>>> javascript and images are served directly by Apache (and this is set up >>>> with the RewriteRules), everything else is passed through to the Galaxy >>>> application via a proxied http connection. Right now I could presumably >>>> use the URL >>>> http://server/galaxy/galaxy-dist/database/files/000/dataset_1.dat to view >>>> a dataset directly. >>>> >>>> --nate >>>> >>>>> >>>>> >>>>> >>>>> Best, >>>>> Huayan >>>>> >>>>> >>>>> On 13 Feb, 2012, at 11:40 AM, Huayan Gao wrote: >>>>> >>>>>> Hi Nate, >>>>>> >>>>>> I removed the proxy section in httpd file and got the following >>>>>> screenshot. It seems working but not in the way we expected. >>>>>> I will keep looking for the solution but do you know how to fix it? >>>>>> >>>>>> It seems to say, "the file .../static/welcome.html is missing" or >>>>>> something like that. >>>>>> >>>>>> Thanks, >>>>>> Huayan >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> <Screen Shot 2012-02-13 at 11.37.57 AM.png> >>>>>> >>>>>> >>>>>> >>>>>> On 10 Feb, 2012, at 10:28 AM, Huayan Gao wrote: >>>>>> >>>>>>> Hi Nate, >>>>>>> >>>>>>> >>>>>>> Yes, I did follow the instructions. But I came to the question in >>>>>>> httpd.conf file. >>>>>>> I put galaxy-dist under my document root which is /var/www/html/. >>>>>>> When my server is up, I can access my UCSC genome browser mirror site >>>>>>> through my ip address, for example, http://61.244. xxx.xxx. >>>>>>> Then how should I set up in httpd.conf file so I can access galaxy >>>>>>> using my ip address, for example, http://61.244. xxx.xxx/galaxy? >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> Thanks, >>>>>>> Best, >>>>>>> Huayan >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> On 10 Feb, 2012, at 1:17 AM, Nate Coraor wrote: >>>>>>> >>>>>>>> On Feb 8, 2012, at 1:00 AM, Huayan Gao wrote: >>>>>>>> >>>>>>>>> Dear Sir or Madam, >>>>>>>>> >>>>>>>>> I am installing a galaxy server on CentOS with UCSC Genome Browser >>>>>>>>> mirror site. The mirror site works well. I installed the galaxy in >>>>>>>>> the same server. >>>>>>>>> Now my question is: how to set up httpd.conf file so I can access >>>>>>>>> both websites(UCSC Genome Browser, and Galaxy) remotely? >>>>>>>> >>>>>>>> Hi Huayan, >>>>>>>> >>>>>>>> Have you consulted the production server documentation? >>>>>>>> >>>>>>>> http://usegalaxy.org/production >>>>>>>> >>>>>>>> --nate >>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> Best, >>>>>>>>> Huayan >>>>>>>>> ___________________________________________________________ >>>>>>>>> Please keep all replies on the list by using "reply all" >>>>>>>>> in your mail client. To manage your subscriptions to this >>>>>>>>> and other Galaxy lists, please use the interface at: >>>>>>>>> >>>>>>>>> http://lists.bx.psu.edu/ >>>>>>>> >>>>>>> >>>>>> >>>>> >>>> >>> >>> >> > > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. 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