Sorry, the subject should read "mistakenly routed to root". The question still stands. -r
On Fri, Jun 22, 2012 at 2:10 PM, Rob Syme <rob.s...@gmail.com> wrote: > Galaxy type: local > > I'm trying to get IGV to download files served from the galaxy instance > through "display_application". > When IGV makes a request for the BAM file, it is re-routed to root like so: > > wget > http://example.org/galaxy/display_application/e2132aef71b11dbf/igv_bam/local_default/cc7ba224ab9e7b70/data/galaxy_e2132aef71b11dbf.bam > --2012-06-22 13:58:00-- http://example.org > /galaxy/display_application/e2132aef71b11dbf/igv_bam/local_default/cc7ba224ab9e7b70/data/galaxy_e2132aef71b11dbf.bam > Connecting to example.org:80... connected. > HTTP request sent, awaiting response... 302 Found > Location: > /galaxy/root?app_action=data&user_id=cc7ba224ab9e7b70&app_name=igv_bam&link_name=local_default&action_param=galaxy_e2132aef71b11dbf.bam&dataset_id=e2132aef71b11dbf > [following] > --2012-06-22 13:58:00-- http://example.org > /galaxy/root?app_action=data&user_id=cc7ba224ab9e7b70&app_name=igv_bam&link_name=local_default&action_param=galaxy_e2132aef71b11dbf.bam&dataset_id=e2132aef71b11dbf > Reusing existing connection to example.org:80. > HTTP request sent, awaiting response... 200 OK > Length: unspecified [text/html] > Saving to: 'galaxy_e2132aef71b11dbf.bam.1' > > [ <=> > ] 27,581 > --.-K/s in 0s > > 2012-06-22 13:58:00 (146 MB/s) - 'galaxy_e2132aef71b11dbf.bam.1' saved > [27581] > > Giving us a text/html page rather than the BAM file. > > I see that I'm not the first person to run into this: > http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-December/007901.html but > I'm still not really sure how to solve the problem. > > I'm no sysadmin, so my apache config skills are very patchy. My config is > up at https://gist.github.com/2970592. Any help would be very much > appreciated. > > Rob Syme > > PhD Student > Curtin University > > > > >
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