I see the bug you're running into.  As a temporary solution, executing 
workflows via the API with 'no_add_to_history' in the payload should work as 
expected.  I'll have a permanent fix out shortly.

-Dannon

On Jul 5, 2012, at 5:12 PM, Thon Deboer wrote:

> Hi,
> 
> I am continueing to struggle with the API....
> 
> I have created a workflow execution engine that submits a workflow using the 
> examples in the API (scripts/api).
> 
> When I run the WF on data in the LIBRARIES everything works fine.
> But when I choose a HISTORY as my source of data, the WF executes fine, but 
> the history I use is emptied of all the files in there!
> 
> This is very bizarre....Any ideas what is going on here?
> I know not a lot of people are using the API, but it is the only way I can 
> run paired end WF on more than a couple of samples...
> 
> Regards,
> 
> Thon de Boer, Ph.D.
> Bioinformatics Guru
> +1-650-799-6839
> thondeb...@me.com
> LinkedIn Profile
> 
> 
> 
> 
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