How did you try to remove the tool? Do you mean that you used the Galaxy Admin UI to Uninstall the repository? The datatypes are defined in a file named datatypes_conf.xml in the installed gmap repository. Assuming you can uninstall this repository, doing so will eliminate this problem.
I do not recommend nuking tables. If you manually deleted rows from your database tables, you may have caused problems with your environment that could render it un-useable. On Jul 11, 2012, at 6:46 PM, Anthonius deBoer wrote: > Hi, > > I had some more bad luck trying to install the GMAP stuff from the TOOLSHEd > but revision 10 is broken since it does not allow you to select a section and > just stores the programs in the main tree... > > But when I tried to remove the tool I got the following error for every run, > since the sniffers where still looking for a module called GMAP... > > Which table should I nuke to get rid of this association? Where are the > datatype associations stored? > There does not seem to be an XML file for this, so I hope i can just remove > some lines from the postgres database table but there are no obvious table > names I can find... > > WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype > 'galaxy.datatypes.gmap:IntervalAnnotation' to sniff_order: No module named g! > map > WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype > 'galaxy.datatypes.gmap:SpliceSiteAnnotation' to sniff_order: No module named > gmap > WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype > 'galaxy.datatypes.gmap:IntronAnnotation' to sniff_order: No module named gmap > WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype > 'galaxy.datatypes.gmap:SNPAnnotation' to sniff_order: No module named gmap > WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype > 'galaxy.datatypes.gmap:IntervalAnnotation' to sniff_order: No module named > gmap > WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype > 'galaxy.datatypes.gmap:SpliceSiteAnnotation' to sniff_order: No module named > gmap > WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype > 'galaxy.datatypes.gmap:IntronAnnotation' to sniff_order: No module named gmap > WARNING:galaxy.datatypes.registry:Error appending sniffer for datatype > 'galaxy.datatypes.gmap:SNPAnnotation' to sniff_order: No module named gmap > > Thanks > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/
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