Excuses for the repost, but I really need to solve this.
Uploading with FTP fails on our Galaxy, because the /tmp directory has
not enough space. How can I hack in the Galaxy code base that the
temporary directory needs to be /mnt/galaxydb/tmp ? Another solution:
how can I provide a symlink to our FTP directory?
Thanks for any hint,
Joachim
Joachim Jacob, PhD
Rijvisschestraat 120, 9052 Zwijnaarde
Tel: +32 9 244.66.34
Bioinformatics Training and Services (BITS)
http://www.bits.vib.be
@bitsatvib
On 08/08/2012 12:12 PM, Joachim Jacob wrote:
Dear devs,
Question about FTP upload: is it correct that Galaxy copies the data
from the FTP upload directory to galaxy database instead of
symlinking? Can I set somewhere the option to symlink instead of copying?
I run galaxy in a small virtual machine. The Galaxy database is on a
network share. With 'get data' - 'Upload file', when importing the
files I have uploaded with FTP, there is a process filling up the /tmp
directory with the file I want to import.
Kind regards,
Joachim
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
