Maybe I'm just doing it wrong… but I find it unusually difficult to put 
together a coherent pull request without doing a dedicated repo clone.
maybe somebody who knows a good way to submit pull requests could populate this 
wiki page?

http://wiki.g2.bx.psu.edu/Develop/Mercurial

brad
On Aug 23, 2012, at 8:55 AM, Jeremy Goecks <jeremy.goe...@emory.edu>
 wrote:

> For a simple patch like yours, just pasting and sending your diff to the list 
> works well:
> 
> %hg diff
> ...
>       
> For bigger patches/enhancements, a bitbucket fork + pull request is highly 
> encouraged.
> 
> Best,
> J.
> 
> On Aug 23, 2012, at 4:47 AM, James wrote:
> 
>> Hi All,
>> 
>> Today I found a bug relating to the file permissions in composite datatypes. 
>> When
>> the extrafiles directory was created and the server was running through 
>> apache, the permission did not
>> allow a galaxy user to download by following the HTML link. Found it was 
>> related to meta data files
>> not using the os.chmod function to set the permissions of the user data in 
>> upload.py. Added that
>> line of code and it works and the file permissions match that of other files 
>> in the database.
>> 
>> Somehelp with submitting a patch would be welcome ( although one line patch 
>> it would be helpful to me.)
>> 
>> Cheers
>>    James Boocock
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> 
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--
Brad Langhorst
langho...@neb.com
978-380-7564





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