James,
Yes, I think discovery is the main problem, and your suggestion
would help. I suppose having conventions would also help discovery and
understanding in general, but that is difficult to achieve in a
community-based project.
Todd
On 10/30/2012 8:00 AM, James Taylor wrote:
On Mon, Oct 29, 2012 at 9:23 PM, Todd Oakley
<todd.oak...@lifesci.ucsb.edu> wrote:
We've developed a large number of tools to allow my lab to conduct
phylogenetic analyses in Galaxy. Inspired by the mothur package in Galaxy,
which is all in one repo, I made the decision to add all our related tools
to 1 repo on the tool shed. However, it seems that makes individual tools
like raxml difficult to find for other users.
Todd, I prefer bundling related tools (and other assets) in repositories.
If the problem is discovery perhaps we can fix this in the toolshed UI
by adding the ability to browse for tools directly in addition to
browsing for repositories?
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--
***************************************
Todd Oakley, Professor
Ecology Evolution and Marine Biology
University of California, Santa Barbara
Santa Barbara, CA 93106 USA
***************************************
Lab Website <http://labs.eemb.ucsb.edu/oakley/todd/>
Twitter: @UCSB_OakleyLab
*Recent Papers: *
* Pancrustacean Phylotranscriptomics
MBE Paper
<http://mbe.oxfordjournals.org/content/early/2012/09/12/molbev.mss216.abstract>
* Convergent Evolution in Cephalopoda
BMC Ev Biol <http://www.biomedcentral.com/1471-2148/12/129/abstract>
* Cnidocyte discharge regulated by opsin and light
BMC Biology Paper <http://tinyurl.com/7dajl2q> Scientific American
Write-up
<http://blogs.scientificamerican.com/science-sushi/2012/03/05/hydra-watch-what-they-eat/>
* Sponge Larvae Could be Guided by Cryptochrome
J Exp Biol. Paper <http://jeb.biologists.org/content/215/8/ii> |
Nature News
<http://www.nature.com/nature/journal/v484/n7393/full/484145d.html>
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