Hi Franco, You're running a fairly old version of Galaxy - the main Galaxy tool shed tracks the galaxy-dist repository on bitbucket. You should upgrade to the latest dist release which went out today - the change set is 8286:f364d992270c. We'll take a look at reproducing this behavior first thing tomorrow with the dist revision to ensure there are no problems using your steps below. If we discover any issues we'll let you know.
Thanks for the additional information. Greg Von Kuster On Dec 3, 2012, at 9:21 PM, Franco Caramia wrote: > Hi Greg, > > Our Galaxy version is galaxy-dist 7712:e6444e7a1685 . The tool is “contra” > from this repo: http://fcara...@toolshed.g2.bx.psu.edu/repos/fcaramia/contra > I own the repo and uploaded the tool_dependencies file > Then the following steps: > > Installing the tool from toolshed: Success > Installing tool dependencies: Failed > Deleting tool: Success > Re-installing tool: Failed > > > Thanks, > > Franco > > > > > On 4/12/12 12:40 AM, "Greg Von Kuster" <g...@bx.psu.edu> wrote: > >> Hello Franco, >> >> It's impossible to help you with this issue and the issues you sent in your >> previous messages unless you provide more information. What version of >> Galaxy are you running? From what tool shed are you installing >> repositories. What repository are you installing? What are the precise >> steps you took to produce the behavior? >> >> Keep in mind that the Galaxy test tool shed tracks the galaxy-central >> repository on bitbucket while the Galaxy main tool shed tracks the >> galaxy-dist repository on bitbucket. >> >> Greg Von Kuster >> >> On Dec 2, 2012, at 11:36 PM, Franco Caramia wrote: >> >>> URL: >>> http://bioinf-galaxy/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a >>> Module paste.exceptions.errormiddleware:143 in __call__ >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> app_iter = self.application(environ, start_response) >>> Module paste.debug.prints:98 in __call__ >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> environ, self.app) >>> Module paste.wsgilib:539 in intercept_output >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> app_iter = application(environ, replacement_start_response) >>> Module paste.recursive:80 in __call__ >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> return self.application(environ, start_response) >>> Module paste.httpexceptions:632 in __call__ >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> return self.application(environ, start_response) >>> Module galaxy.web.framework.base:160 in __call__ >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> body = method( trans, **kwargs ) >>> Module galaxy.web.framework:184 in decorator >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> return func( self, trans, *args, **kwargs ) >>> Module galaxy.web.controllers.admin_toolshed:350 in browse_repositories >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> return self.reselect_tool_panel_section( trans, **kwd ) >>> Module galaxy.web.framework:184 in decorator >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> return func( self, trans, *args, **kwargs ) >>> Module galaxy.web.controllers.admin_toolshed:1352 in >>> reselect_tool_panel_section >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> status=status ) >>> Module galaxy.web.framework:746 in fill_template >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> return self.fill_template_mako( filename, **kwargs ) >>> Module galaxy.web.framework:757 in fill_template_mako >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> return template.render( **data ) >>> Module mako.template:296 in render >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> return runtime._render(self, self.callable_, args, data) >>> Module mako.runtime:660 in _render >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> **_kwargs_for_callable(callable_, data)) >>> Module mako.runtime:692 in _render_context >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> _exec_template(inherit, lclcontext, args=args, kwargs=kwargs) >>> Module mako.runtime:718 in _exec_template >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> callable_(context, *args, **kwargs) >>> Module _base_mako:42 in render_body >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> __M_writer(unicode(next.body())) >>> Module _admin_tool_shed_repository_reselect_tool_panel_section_mako:76 in >>> render_body >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> __M_writer(unicode(render_tool_dependency_section( >>> >> install_tool_dependencies_check_box, [ repo_info_dict ] ))) >>> Module _admin_tool_shed_repository_common_mako:204 in >>> render_render_tool_dependency_section >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> changeset_revision ) >>> Module posixpath:67 in join >>> >> >>> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#> >>> >> elif path == '' or path.endswith('/'): >>> AttributeError: 'NoneType' object has no attribute 'endswith' >>> ___________________________________________________________ >>> Please keep all replies on the list by using "reply all" >>> in your mail client. 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