Is the cloud man Amazon EC2 instance updated with the latest? From: Jennifer Jackson <j...@bx.psu.edu<mailto:j...@bx.psu.edu>> Date: Thursday, December 20, 2012 8:49 PM To: Galaxy Announce <galaxy-annou...@bx.psu.edu<mailto:galaxy-annou...@bx.psu.edu>>, Galaxy User <galaxy-u...@bx.psu.edu<mailto:galaxy-u...@bx.psu.edu>>, Galaxy Dev <galaxy-...@bx.psu.edu<mailto:galaxy-...@bx.psu.edu>> Subject: [galaxy-dev] Galaxy December 20, 2012 Distribution & News Brief
Galaxy Dec 20, 2012 Distribution & News Brief<http://wiki.galaxyproject.org/News/2012_12_20_DistributionNewsBrief> Complete News Brief<http://wiki.galaxyproject.org/DevNewsBriefs/2012_12_20> Highlights: * Required Metadata Reset for instances running Tool Shed<http://wiki.galaxyproject.org/Tool%20Shed> repositories. Be sure to learn how<http://wiki.galaxyproject.org/ResettingMetadataForInstalledRepositories>. * Simplified tool config: all tools (including tool shed repos) can now have handlers and runners assigned based on their "short id". * New GFF<http://wiki.galaxyproject.org/Learn/Datatypes#GFF>/GFF3<http://wiki.galaxyproject.org/Learn/Datatypes#GFF3> annotation support for Cuffcompare/merge/diff<http://cufflinks.cbcb.umd.edu/manual.html>. * More Updated tools: TopHat2<http://tophat.cbcb.umd.edu/manual.html>, Bowtie2<http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml>. * Multiple pull-requests contributed by community (thanks!): #83<https://bitbucket.org/galaxy/galaxy-central/pull-request/83/allow-a-datatypes-merge-method-to>, #85<https://bitbucket.org/galaxy/galaxy-central/pull-request/85/another-round-of-bug-fixes-and>, #90<https://bitbucket.org/galaxy/galaxy-central/pull-request/90/patch-to-make-extended_metadata-loader>, #91<https://bitbucket.org/galaxy/galaxy-central/pull-request/91/fixing-missing-jobwrapper-import>. * Issue tracking help is now covered in detailed in our new wiki: Using the Galaxy Issue Board<http://wiki.galaxyproject.org/Issues> * GCC2013 Training Day Topic Nominations<http://wiki.galaxyproject.org/Events/GCC2013/TrainingDay> are now open through January 11th<http://wiki.galaxyproject.org/Events/GCC2013/KeyDates> * Plus more Tool Shed<http://wiki.galaxyproject.org/Tool%20Shed> updates, Bug Fixes, and improvements to Trackster, UI, Libraries, and Histories. getgalaxy.org<http://getgalaxy.org> bitbucket.org/galaxy/galaxy-dist<http://bitbucket.org/galaxy/galaxy-dist> galaxy-dist.readthedocs.org<http://galaxy-dist.readthedocs.org> new: $ hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist upgrade: $ hg pull -u -r 36ad8aa7b922 Best wishes for a safe and happy holiday, The Galaxy Team<http://wiki.galaxyproject.org/Galaxy%20Team> -- Jennifer Jackson http://galaxyproject.org
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