Hello, Dan. I'm glad you updated. I noticed another error in your log: 127.0.0.1 - - [04/Feb/2013:09:50:43 -0700] "POST /tool_runner/upload_async_create HTTP/1.1" 500 - "http://localhost:8080/"; "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_2) AppleWebKit/537.17 (KHTML, like Gecko) Chrome/24.0.1312.57 Safari/537.17" Debug at: http://localhost:8080/_debug/view/1360000104
Two things - 1. Can you restart your daemon and make sure you're using a fresh history before the upload? 2. If you're upload fails this time, would you search your paster.log for something close to "Debug at: http://localhost:8080/_debug/view/";... and navigate there with your browser? It should show that error in more depth and allow you to post that here. Thanks for the help, C On Mon, Feb 4, 2013 at 12:55 PM, Dan Tenenbaum <dtene...@fhcrc.org> wrote: > Hi Carl, > > On Thu, Jan 31, 2013 at 1:37 PM, Dan Tenenbaum <dtene...@fhcrc.org> wrote: > > Here you go. I notice a couple of stack traces. > > Thanks! > > Dan > > > > > > I noticed that another user on the list seemed to have a similar > problem and I saw that that problem was possibly addressed in a new > commit. I updated to 8531:3299529e0fe8 and I still have the same > problem, but perhaps different output. > > I tried logging in and the UI does not seem to recognize that I have > logged in. Then I tried to upload a file and it failed, with a > traceback in the console: > > 127.0.0.1 - - [04/Feb/2013:09:45:13 -0700] "GET /history HTTP/1.1" 200 > - "http://localhost:8080/tool_runner/index"; "Mozilla/5.0 (Macintosh; > Intel Mac OS X 10_8_2) AppleWebKit/537.17 (KHTML, like Gecko) > Chrome/24.0.1312.57 Safari/537.17" > 127.0.0.1 - - [04/Feb/2013:09:45:12 -0700] "GET /history HTTP/1.1" 200 > - "http://localhost:8080/tool_runner/upload_async_message"; > "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_2) AppleWebKit/537.17 > (KHTML, like Gecko) Chrome/24.0.1312.57 Safari/537.17" > ---------------------------------------- > Exception happened during processing of request from ('127.0.0.1', 49617) > Traceback (most recent call last): > File > "/Users/dtenenba/dev/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpserver.py", > line 1053, in process_request_in_thread > self.finish_request(request, client_address) > File > "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/SocketServer.py", > line 323, in finish_request > self.RequestHandlerClass(request, client_address, self) > File > "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/SocketServer.py", > line 641, in __init__ > self.finish() > File > "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/SocketServer.py", > line 694, in finish > self.wfile.flush() > File > "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/socket.py", > line 303, in flush > self._sock.sendall(view[write_offset:write_offset+buffer_size]) > error: [Errno 32] Broken pipe > ---------------------------------------- > > Then I started a daemon session in order to be able to send you the > full output, but, although the upload still fails, I don't get this > same traceback in the paster.log. I attach it anyway. > > Thanks, > Dan > > > > > On Thu, Jan 31, 2013 at 12:15 PM, Carl Eberhard <carlfeberh...@gmail.com> > wrote: > >> Ok - interesting! > >> Can you send me the paster.log from a daemon session where you try an > >> upload? > >> > >> Steps for that are: > >> 1. from the directory of your galaxy installation: sh run.sh --daemon > (you > >> should see 'Entering daemon mode') > >> 2. Wait a minute, then load localhost:8080 in your browser, login, and > try > >> an upload > >> 3. When that fails, you can shut down: (from the galaxy installation > again) > >> sh run.sh --stop-daemon > >> > >> The file 'paster.log' should be in that same directory. > >> > >> Let me know if there are any problems, > >> C > >> > >> >
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
