Hi Dave, Thanks for the quick reply. Your fix worked like a charm!
-jorrit > Date: Tue, 19 Feb 2013 12:54:23 -0500 > From: Dave Bouvier <d...@bx.psu.edu> > To: galaxy-dev@lists.bx.psu.edu, closetic...@galaxyproject.org > Subject: Re: [galaxy-dev] KeyError ['tools'] on importing workflow > from locally installed repository > Message-ID: <5123bc4f.90...@bx.psu.edu> > Content-Type: text/plain; charset=ISO-8859-1; format=flowed > > Jorrit, > > Thank you for uncovering that issue, I've commited a fix in the stable > branch of galaxy-central at 8887:d5896e8a60fa. To apply that changeset, > you'll need to run the following commands from your Galaxy directory: > > $ hg pull -b stable https://bitbucket.org/galaxy/galaxy-central/ > $ hg update stable > > --Dave B. > > On 2/18/13 21:57:18.000, jorrit poelen wrote: >> Hey y'all, >> >> I am testing how to best share a workflow through a tool shed. I stumbled >> across a possible bug and am hoping that this is simply a configuration >> issue. >> >> Steps to reproduce: >> >> 1. In local galaxy instance goto . . admin > search and browse tool sheds >> 2. locate select "Galaxy test tool shed" >> 3. search for "obo" >> 4. preview and install repository "obo_test_workflows" >> 5. in next screen click "install to Galaxy" >> 6. in next screen click "install" >> 7. in next screen click "obo_test_workflows" >> 8. in next screen, under workflows, click "TestOboWorkflow1" >> 9. in svg graphics page > repository actions > import workflow to galaxy >> >> Expected results: >> Workflow is installed and made available in workflow section in local Galaxy >> instance. >> >> Actual results: >> URL: >> http://galaxy:7474/admin_toolshed/import_workflow?repository_id=2d9035b3fc152403&workflow_name=0c2d739e4f60c1bed9e8e46f2f317141702ceb26%3A546573744f626f576f726b666c6f7731 >> File >> '/home/ubuntu/galaxy-dist/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py', >> line 364 in respond >> app_iter = self.application(environ, detect_start_response) >> File >> '/home/ubuntu/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/debug/prints.py', >> line 98 in __call__ >> environ, self.app) >> File '/home/ubuntu/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/wsgilib.py', >> line 539 in intercept_output >> app_iter = application(environ, replacement_start_response) >> File '/home/ubuntu/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/recursive.py', >> line 80 in __call__ >> return self.application(environ, start_response) >> File >> '/home/ubuntu/galaxy-dist/eggs/Paste-1.6-py2.7.egg/paste/httpexceptions.py', >> line 632 in __call__ >> return self.application(environ, start_response) >> File '/home/ubuntu/galaxy-dist/lib/galaxy/web/framework/base.py', line 132 >> in __call__ >> return self.handle_request( environ, start_response ) >> File '/home/ubuntu/galaxy-dist/lib/galaxy/web/framework/base.py', line 185 >> in handle_request >> body = method( trans, **kwargs ) >> File '/home/ubuntu/galaxy-dist/lib/galaxy/web/framework/__init__.py', line >> 216 in decorator >> return func( self, trans, *args, **kwargs ) >> File >> '/home/ubuntu/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', >> line 744 in import_workflow >> tools_metadata = metadata[ 'tools' ] >> KeyError: 'tools' >> >> Thanks in advance for suggestions on how to solve / work around this issue. >> >> -jorrit >> >> PS Note that the workflow can be installed using a url pointing to the >> workflow from a hg repository on bitbucket (ie. >> https://bitbucket.org/jhpoelen/obo_workflows/raw/25d386a50562d02e03fa821d96a831cf75edcbae/Galaxy-Workflow-TestOboWorkflow1.ga). >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> >> http://lists.bx.psu.edu/ >> > > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
