Is this a fresh clone from galaxy-dist or have you pulled it from somewhere
else? It looks like your galaxy clone's lib/galaxy/datatypes/registry.py
has been altered to have an extra import, 'gmap', for gmap tools.
-Dannon
On Wed, Mar 6, 2013 at 12:08 PM, David Hoover <hoove...@helix.nih.gov>wrote:
> Hi,
>
> I'm trying to load an instance of Galaxy from scratch, and I'm getting
> this error message after configuration and typing "./run.sh":
>
> Traceback (most recent call last):
> File "./scripts/paster.py", line 33, in <module>
> serve.run()
> File "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**serve.py",
> line 1056, in run
> invoke(command, command_name, options, args[1:])
> File "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**serve.py",
> line 1062, in invoke
> exit_code = runner.run(args)
> File "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**serve.py",
> line 227, in run
> result = self.command()
> File "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**serve.py",
> line 650, in command
> app = loadapp( app_spec, name=app_name, relative_to=base,
> global_conf=vars)
> File
> "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**loadwsgi.py",
> line 350, in loadapp
> return loadobj(APP, uri, name=name, **kw)
> File
> "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**loadwsgi.py",
> line 374, in loadobj
> global_conf=global_conf)
> File
> "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**loadwsgi.py",
> line 399, in loadcontext
> global_conf=global_conf)
> File
> "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**loadwsgi.py",
> line 423, in _loadconfig
> return loader.get_context(object_**type, name, global_conf)
> File
> "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**loadwsgi.py",
> line 561, in get_context
> section)
> File
> "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**loadwsgi.py",
> line 620, in _context_from_explicit
> value = import_string(found_expr)
> File
> "/spin1/users/galaxy/galaxy1/**lib/galaxy/util/pastescript/**loadwsgi.py",
> line 125, in import_string
> return pkg_resources.EntryPoint.**parse("x=" + s).load(False)
> File "/spin1/users/galaxy/galaxy1/**lib/pkg_resources.py", line 1954,
> in load
> entry = __import__(self.module_name, globals(),globals(), ['__name__'])
> File "/spin1/users/galaxy/galaxy1/**lib/galaxy/web/buildapp.py", line
> 3, in <module>
> from galaxy.webapps.galaxy.buildapp import app_factory
> File
> "/spin1/users/galaxy/galaxy1/**lib/galaxy/webapps/galaxy/**buildapp.py",
> line 18, in <module>
> from galaxy import config, jobs, util, tools
> File "/spin1/users/galaxy/galaxy1/**lib/galaxy/jobs/__init__.py", line
> 15, in <module>
> from galaxy import util, model
> File "/spin1/users/galaxy/galaxy1/**lib/galaxy/model/__init__.py", line
> 13, in <module>
> import galaxy.datatypes.registry
> File "/spin1/users/galaxy/galaxy1/**lib/galaxy/datatypes/registry.**py",
> line 9, in <module>
> import gmap # added for gmap tools
> ImportError: No module named gmap
>
> What is missing?
>
> David Hoover
> Helix Systems Staff
> ______________________________**_____________________________
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