Hi Dannon. Thanks! I had been experimenting with BioBlend and forgot to add the /api/ on the url.
./example_watch_folder.py 8c25bc83f6f9e4001dd21eb7b64f063f http://localhost:8080/api/ /Users/Rob/Documents/galaxy-db/input/ /Users/Rob/Documents/galaxy-db/output/ "API Imports" 2a56795cad3c7db3 However, I am now running into a new error when it tries to create the API Imports folder Traceback (most recent call last): File "./example_watch_folder.py", line 87, in <module> main(api_key, api_url, in_folder, out_folder, data_library, workflow ) File "./example_watch_folder.py", line 30, in main library_id = library[0]['id'] KeyError: 0 (This is coming from the section that creates 'API Imports' library if it doesn't already exist) 24: for library in libs: 25: if library['name'] == data_library: 26: library_id = library['id'] 27: if not library_id: 28: lib_create_data = {'name':data_library} 29: library = submit(api_key, api_url + 'libraries', lib_create_data, return_formatted=False) 30: library_id = library[0]['id'] As I mentioned, I'm not familiar with python, but I can't see where 'library[0]['id']' is set or is in scope, since this seems to be the item in the iterator above this section. Cheers, Rob Rob Leclerc, PhD <http://www.linkedin.com/in/robleclerc> <https://twitter.com/#!/robleclerc> P: (US) +1-(917)-873-3037 P: (Shanghai) +86-1-(861)-612-5469 Personal Email: rob.lecl...@aya.yale.edu On Tue, Mar 12, 2013 at 6:14 PM, Dannon Baker <dannon.ba...@gmail.com>wrote: > The second argument there should point to the url of Galaxy's API -- > in this case http://localhost:8080/api, I'm guessing. > > -Dannon > > On Tue, Mar 12, 2013 at 6:11 PM, Rob Leclerc <robert.lecl...@gmail.com> > wrote: > > > > I'm trying to get the example_watch_folder.py to work with a simple > example, > > but I am running into an error (Caveat, python is not my native language) > > > > I call the following script, but get the subsequent error: > > > > $ ./example_watch_folder.py 8c25bc83f6f9e4001dd21eb7b64f063f > > http://localhost:8080/ /Users/Rob/Documents/galaxy-db/input/ > > /Users/Rob/Documents/galaxy-db/output/ "API Imports" 2a56795cad3c7db3 > > > > > > URL did not return JSON data > > > > > > The preconditions I have in place are: > > > > 1. I copied my api_key: 8c25bc83f6f9e4001dd21eb7b64f063f > > > > > > 2. I created a new history on http://localhost:8080 > > > > 3. I downloaded the the exons from hg19/chr22 from UCSC > > > > 3. On the dataset I performed a Text Manipulation > Select first (20 > lines) > > > > 4. I extracted a workflow from the history and recorded the workflow id > > (2a56795cad3c7db3). > > > > 5. I created directories: > > > > /Users/Rob/Documents/galaxy-db/input/ > > /Users/Rob/Documents/galaxy-db/output/ > > > > > > My args may be malformed. Can someone provide me an example of a theirs? > > > > Cheers, > > Rob > > > > > > > > ___________________________________________________________ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > > > http://lists.bx.psu.edu/ >
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