Thanks John! I'll give it a try. I can't get to that link, it says "forbidden". Do you have another way to access the content?
What is the significance of the name 200_runners.py? Thanks! -Greg On Thu, Mar 14, 2013 at 12:43 PM, John Chilton <chil...@msi.umn.edu> wrote: > Greg, > > I think you can do this with dynamic job runners. > > http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-June/010080.html > > Step 1) Set: > > default_cluster_job_runner = dynamic:///python/default_runner > > Step 2) Create the file `lib/galaxy/jobs/rules/200_runners.py`, with > contents something like this: > > def default_runner(user_email): > username = user_email.split("@")[0] > return "drmaa://-V -pe batch 8 -A %s/" % username > > and you should be good to go. > > -John > > > > On Wed, Mar 13, 2013 at 7:12 AM, greg <margeem...@gmail.com> wrote: >> Hi guys, >> >> I just wanted to check in and see if anyone had any ideas on this. >> (It's actually the -A flag I'm after.) >> >> I did try putting this in universe.wsgi: >> >> default_cluster_job_runner = drmaa://-V -pe batch 8 -A Account_Name/ >> >> I was thinking galaxy might substitute the user name for >> "Account_Name" but no luck :-( >> >> -Greg >> >> On Tue, Mar 12, 2013 at 1:42 PM, greg <margeem...@gmail.com> wrote: >>> In our local galaxy install we want the cluster jobs to be run from >>> the galaxy user but we want to include a -a [account name] to our grid >>> software bills properly. >>> >>> Here's what I currently have in universe.wsgi: >>> >>> default_cluster_job_runner = drmaa://-V -pe batch 8/ >>> >>> What I want is something like this: >>> >>> default_cluster_job_runner = drmaa://-V -pe batch 8 -a [logged in user >>> name]/ >>> >>> Is this possible? >>> >>> Thanks, >>> >>> Greg >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> >> http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
