Hello,
I am trying to get the trinity wrapper to work on our local galaxy
installation using the latest trinity version.
The main issue is that the Trinity.pl call has --SS_lib_type None in the
script file. The data I am using is unstranded paired end reads and I am
selecting None in the tool parameters.
I looked at the trinity_all.xml file and it seems like the following
code is not working:
#if $inputs.library_type != 'None':
--SS_lib_type $inputs.library_type
#end if
I am new to cheeta and python and I am not sure why this code is not
working. Any suggestion on how to go about debugging it?
Thanks,
-Raj
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